YRC Public Data Repository - Protein Structure Prediction

Protein:	EF3_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	1047 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EF3_SCHPO.

Description	E-value	Query Range	Subject Range
EF3_CANGA - Elongation factor 3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-... EF3_CANGA - Elongation factor 3 OS=Candida glabrata GN=TEF3 PE=3 SV=2	509.0	[0..5]	[1025..2]
gi\|3786314 - gi\|3786314\|dbj\|BAA33959.1\| translation elongation factor3 [Candida glabrata]	509.0	[0..5]	[1025..2]
YEF3 - Translational elongation factor 3, stimulates the binding of aminoacyl-tRNA (AA-tRNA) to ribosomes b... EF3A_YEAST - Elongation factor 3A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEF3 PE=1 SV=4	508.0	[0..5]	[1025..2]
EF3_ASHGO - Elongation factor 3 OS=Ashbya gossypii GN=TEF3 PE=3 SV=1 EF3_ASHGO - Elongation factor 3 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN...	507.0	[0..5]	[1025..2]
gi\|49644768 - gi\|49644768\|emb\|CAG98340.1\| KLLA0F12210p [Kluyveromyces lactis] gi\|49644768, gi\|... - gi\|50311217\|ref\|XP_455632.1\| unnamed protein product [Kluyveromyces lactis], gi\|49644768\|emb\|CAG9834...	507.0	[0..5]	[1025..2]
gi\|283393, gi\|2521 - pir\|\|S25363 translation elongation factor eEF-3 - yeast (Candida albicans), gi\|2521\|emb\|CAA78282.1\| ... gi\|238882561 - gi\|238882561\|gb\|EEQ46199.1\| elongation factor 3 [Candida albicans WO-1]	507.0	[0..1]	[985..1]
orf19.11629 - CEF3 CGDID:CAL0005746 Assembly 19, Contig19-20198 (36268, 33116) CDS, reverse complemented, translat... gi\|68489571, gi\|... - gi\|68489571\|ref\|XP_711404.1\| translation elongation factor 3 [Candida albicans SC5314], gi\|46432703\|...	506.0	[0..1]	[985..1]

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Predicted Domain #1

Region A:
Residues: [1-1047]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKSENKQS VKALEELLKH LTVCDAAEEA DAAKALASFV NGPIEEQDAP SQVFSAISKQ  60
   61 LNDKNATARE RVLKGLEAVA NHGSVAADVE PYLVELLPAV IAKVADKQNA VRDAAIAASK 120
  121 AIVRCTTPYA VKAIVPSVLE SIHTTGKWNE KMNSLQLLDV LVEVAPSQLS YSLPQIIPVV 180
  181 SESMWDTKAE VKKQSKETMT KVCTLIANAD IDRFIPELIN CIAHPEEVPE TIHSLGATTF 240
  241 VTEVQAPTLS IMVPLLARGL NERSTPIKRK TAVIIDNMSK LVEDPQVVAP FLPKLLPGLY 300
  301 HIKDTIGDPE CRSVVQRAIT TLERVGNVVD GKIPEVSTAA NPEVCLETLK AVLGEIKVPT 360
  361 NEEVIAKYVA NIAAQLVEEK DNENESWVLN ITPYLTAFID EAHIHKIVEQ LRTRSIAKIP 420
  421 GGASHAEEEE EGEDLCNCEF SLAYGAKILL NRTRLRLKRG RRYGLCGPNG SGKSTLMRAI 480
  481 VNGQVEGFPT HLRTVYVEHD IDESEADTPS VDFILQDPAV PIKDRDEIVK ALKENSFTDE 540
  541 LINMPIGSLS GGWKMKLALT RAMFKNPDIL LLDEPTNHLD VVNVAWLENF LVNQKDVSSI 600
  601 IVSHDSGFLD HVVQAIIHYE RFKLRKYLGN MSEFVKKVPS AKSYYELGAS EMEFKFPEPG 660
  661 FLEGVKTKQR AIIKVQHMSF QYPGTSKPQL NDISFQVSLS SRIAVIGPNG AGKSTLIKVL 720
  721 TGELLPTVGE IYQHENCRIA YVAQAAFTHL GHHPDKTPSE YIQWRFQSGE DLEAMDKASR 780
  781 VISEADEEAM KNKIFKIEGT QRKILGIHSR RKLKNSYEYE CSFLVGENIG MKSERWVPMM 840
  841 SSDNAWLPRG ELMETHAKMV AEVDRAEALK SGQFRPLVRK EIEEHCSLLG LDAELVSHSR 900
  901 IKGLSGGQKV KLVLAACTWL RPHVIVLDEP TNYLDRDSLG ALSKGLKNFG GGVVLVTHSR 960
  961 EFTEGLTEEV WAVNNGHMTP SGHNWVSGQG SGPRIQEKEE GDTFDAFGNK IEKAKKAKKL1020
 1021 TGAELRKKKK ERMARRKAGL EVSDDEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	143.0
Match:	2iw3A
Description:	No description for 2iw3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits