YRC Public Data Repository - Protein Structure Prediction

Protein:	LSG1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	616 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSG1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|46125633, gi\|... - gi\|46125633\|ref\|XP_387370.1\| hypothetical protein FG07194.1 [Gibberella zeae PH-1], gi\|42554949\|gb\|E...	291.0	[0..1]	[615..1]
gi\|38107019, gi\|... - gi\|39972447\|ref\|XP_367614.1\| hypothetical protein MGG_07525 [Magnaporthe grisea 70-15], gb\|EAA53248....	277.0	[0..1]	[615..1]
gi\|85099145 - gi\|85099145\|ref\|XP_960724.1\| hypothetical protein NCU04166 [Neurospora crassa OR74A] gi\|32405786, gi\|... - gi\|32405786\|ref\|XP_323506.1\| hypothetical protein ( (AL513445) conserved hypothetical protein [Neuro...	276.0	[0..1]	[615..1]
gi\|70998520, gi\|... - gi\|70998520\|ref\|XP_753982.1\| ribosome biogenesis GTPase Lsg1 [Aspergillus fumigatus Af293], gi\|66851...	262.0	[0..1]	[616..1]
gi\|169765113 - gi\|169765113\|ref\|XP_001817028.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83764882 - gi\|83764882\|dbj\|BAE55026.1\| unnamed protein product [Aspergillus oryzae]	260.0	[0..1]	[616..1]
gi\|67523615, gi\|... - gi\|67523615\|ref\|XP_659867.1\| hypothetical protein AN2263.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	244.0	[0..1]	[616..1]
gi\|119181878, gi... - gi\|90300900\|gb\|EAS30531.1\| hypothetical protein CIMG_06010 [Coccidioides immitis RS], gi\|119181878\|r...	244.0	[0..1]	[616..1]
gi\|55237002, gi\|... - gi\|58390605\|ref\|XP_317835.2\| ENSANGP00000014391 [Anopheles gambiae str. PEST], gi\|55237002\|gb\|EAA130...	233.0	[0..3]	[577..1]
gi\|115530783 - gi\|115530783\|emb\|CAL49373.1\| novel protein similar to human hypothetical protein FLJ11301 [Xenopus t...	228.0	[0..3]	[535..1]
gi\|169612157, gi... - gi\|169612157\|ref\|XP_001799496.1\| hypothetical protein SNOG_09195 [Phaeosphaeria nodorum SN15], gi\|11...	225.0	[0..1]	[614..1]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLPKSKNQI GLGRAIQSDF TKNRRNRKGG LKHIVDSDPK AHRAALRSVT HETDLDEFLN  60
   61 TAELGEVEFI A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.39794
Match:	1xzpA
Description:	Structure of the GTP-binding protein TrmE from Thermotoga maritima
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [72-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKQNVTVIQN PEQNPFLLSK EEAARSKQKQ EKNKDRLTIP RRPHWDQTTT AVELDRMERE  60
   61 SFLNWRRNLA QLQDVEGFIV TPFERNLEIW RQLWRVIERS DVVVQIVDAR NPLFFRSAHL 120
  121 EQYVKEVGPS KKNFLLVNKA DMLTEEQRNY WSSYFNENNI PFLFFSARMA AEANERGEDL 180
  181 ETYESTSSNE IPESLQADEN DVHSSRIATL KVLEGIFEKF ASTLPDGKTK MTFGLVGYPN 240
  241 VGKSSTINAL VGSKKVSVSS TPGKTKHFQT INLSEKVSLL DCPGLVFPSF ATTQADLVLD 300
  301 GVLPIDQLRE YTGPSALMAE RIPKEVLETL YTIRIRIKPI EEGGTGVPSA QEVLFPFARS 360
  361 RGFMRAHHGT PDDSRAARIL LKDYVNGKLL YVHPP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.0
Match:	2hjgA
Description:	No description for 2hjgA was found.

Predicted Domain #3

Region A:
Residues: [467-616]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNYPNSGSEF NKEHHQKIVS ATSDSITEKL QRTAISDNTL SAESQLVDDE YFQENPHVRP  60
   61 MVKGTAVAMQ GPVYKGRNTM QPFQRRLNDD ASPKYPMNAQ GKPLSRRKAR QLTALELGVS 120
  121 PEALSSATSK KHNKKNKRSK QRSGVVIDDY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.69897
Match:	1egaA
Description:	GTPase Era, N-terminal domain; GTPase Era C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	2.05455100361149	bayes_pls_golite062009
structural molecule activity	1.76183904409971	bayes_pls_golite062009
protein binding	0.922222418930273	bayes_pls_golite062009
binding	0.88584813990579	bayes_pls_golite062009
RNA binding	0.541311648591408	bayes_pls_golite062009
transcription regulator activity	0.291353090213926	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: