YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56412765, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
Length:	714 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56412765, gi|....

Description	E-value	Query Range	Subject Range
gi\|224467701, gi... - gi\|224583174\|ref\|YP_002636972.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... lcl\|NC_016856.1_... - [gene=pta] [protein=phosphate acetyltransferase] [protein_id=YP_005238418.1] [location=2500770..2502... gi\|204929238, gi... - gi\|204929238\|ref\|ZP_03220381.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|207857756, gi... - gi\|207857756\|ref\|YP_002244407.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|198243957, gi... - gi\|198243957\|ref\|YP_002216409.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|199603748, gi... - gi\|200386650\|ref\|ZP_03213262.1\| putative phosphate acetyltransferase [Salmonella enterica subsp. ent... gi\|238912383 - gi\|238912383\|ref\|ZP_04656220.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|197248002, gi... - gi\|197248002\|ref\|YP_002147298.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|197265259, gi... - gi\|197265259\|ref\|ZP_03165333.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|194471410, gi... - gi\|194471410\|ref\|ZP_03077394.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica ser... gi\|194713110, gi... - gi\|194737608\|ref\|YP_002115408.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... PTA_SALTY - Phosphate acetyltransferase OS=Salmonella typhimurium GN=pta PE=1 SV=1 PTA_SALTY - Phosphate acetyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=pta P... gi\|194402543, gi... - gi\|194443880\|ref\|YP_002041600.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|194448796, gi... - gi\|194448796\|ref\|YP_002046393.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se... gi\|168465954, gi... - gi\|195631250\|gb\|EDX49810.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|168817927, gi... - gi\|205344733\|gb\|EDZ31497.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|62180909, gi\|... - gi\|62180909\|ref\|YP_217326.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serova... gi\|205338663, gi... - gi\|205338663\|gb\|EDZ25427.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|205349317, gi... - gi\|205349317\|gb\|EDZ35948.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|168229712, gi... - gi\|205335916\|gb\|EDZ22680.1\| putative phosphate acetyltransferase [Salmonella enterica subsp. enteric... gi\|197289725, gi... - gi\|197289725\|gb\|EDY29088.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|205325221, gi... - gi\|205325221\|gb\|EDZ13060.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|167994690, gi... - gi\|205327484\|gb\|EDZ14248.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica serovar... gi\|161612930, gi... - gi\|161612930\|ref\|YP_001586895.1\| phosphate acetyltransferase [Salmonella enterica subsp. enterica se...	0.0	[1..714]	[1..714]
gi\|209765002, gi... - pir\|\|E91026 phosphotransacetylase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509... gi\|12516653, gi\|... - gi\|15802844\|ref\|NP_288871.1\| phosphate acetyltransferase [Escherichia coli O157:H7 EDL933], gi\|12516... gi\|13362651, gi\|... - gi\|15832435\|ref\|NP_311208.1\| phosphate acetyltransferase [Escherichia coli O157:H7], gi\|13362651\|dbj... gi\|13362651, gi\|... - gi\|15832435\|ref\|NP_311208.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|208819968, gi... - gi\|208819968\|ref\|ZP_03260288.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4042], ... gi\|209159857, gi... - gi\|209398457\|ref\|YP_002271706.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4115],... gi\|217327241, gi... - gi\|217327241\|ref\|ZP_03443324.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. TW14588],... gi\|218705827, gi... - gi\|218705827\|ref\|YP_002413346.1\| phosphate acetyltransferase [Escherichia coli UMN026], gi\|218432924... gi\|189405670, gi... - gi\|189405670\|ref\|ZP_02823477.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC508], g... gi\|195935676 - gi\|195935676\|ref\|ZP_03081058.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4024] gi\|208728335, gi... - gi\|208808534\|ref\|ZP_03250871.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4206], ... gi\|208733710, gi... - gi\|208812433\|ref\|ZP_03253762.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4045], ... gi\|189357739, gi... - gi\|189402105\|ref\|ZP_02780059.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4401], ... gi\|189403068, gi... - gi\|189403068\|ref\|ZP_02792933.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4486], ... gi\|189403966, gi... - gi\|189403966\|ref\|ZP_02786268.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4501], ... gi\|189372882, gi... - gi\|189404943\|ref\|ZP_02812214.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC869], g... gi\|254593590, gi... - gi\|254794190\|ref\|YP_003079027.1\| phosphate acetyltransferase [Escherichia coli O157:H7 str. TW14359]... gi\|187771320, gi... - gi\|187775769\|ref\|ZP_02797981.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4196], ... gi\|188024704, gi... - gi\|188024704\|ref\|ZP_02773171.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4113], ... gi\|189001885, gi... - gi\|189010142\|ref\|ZP_02805162.2\| phosphate acetyltransferase [Escherichia coli O157:H7 str. EC4076], ...	0.0	[1..713]	[1..714]
gi\|218352628, gi... - gi\|218695896\|ref\|YP_002403563.1\| phosphate acetyltransferase [Escherichia coli 55989], gi\|218352628\|... gi\|218554854, gi... - gi\|218554854\|ref\|YP_002387767.1\| phosphate acetyltransferase [Escherichia coli IAI1], gi\|218361622\|e... gi\|188493696, gi... - gi\|188493696\|ref\|ZP_03000966.1\| phosphate acetyltransferase [Escherichia coli 53638], gi\|188488895\|g... gi\|74312814, gi\|... - gi\|74312814\|ref\|YP_311233.1\| phosphate acetyltransferase [Shigella sonnei Ss046], gi\|73856291\|gb\|AAZ... gi\|187428070, gi... - gi\|187731078\|ref\|YP_001881118.1\| phosphate acetyltransferase [Shigella boydii CDC 3083-94], gi\|18742... gi\|170081913, gi... - gi\|170081913\|ref\|YP_001731233.1\| phosphate acetyltransferase [Escherichia coli str. K-12 substr. DH1... gi\|170019394, gi... - gi\|170019394\|ref\|YP_001724348.1\| phosphate acetyltransferase [Escherichia coli ATCC 8739], gi\|169754... gi\|194436108, gi... - gi\|194436108\|ref\|ZP_03068210.1\| phosphate acetyltransferase [Escherichia coli 101-1], gi\|194424836\|g... gi\|192958498, gi... - gi\|193068219\|ref\|ZP_03049183.1\| phosphate acetyltransferase [Escherichia coli E110019], gi\|192958498... gi\|89109117, gi\|... - gi\|89109117\|ref\|AP_002897.1\| phosphate acetyltransferase [Escherichia coli str. K-12 substr. W3110],... gi\|193062345, gi... - gi\|193062345\|ref\|ZP_03043440.1\| phosphate acetyltransferase [Escherichia coli E22], gi\|192932011\|gb\|... gi\|124501933, gi... - gi\|124526462\|ref\|ZP_01698415.1\| phosphate acetyltransferase [Escherichia coli B], gi\|124501933\|gb\|EA... gi\|191166525, gi... - gi\|191166525\|ref\|ZP_03028355.1\| phosphate acetyltransferase [Escherichia coli B7A], gi\|190903485\|gb\|... PTA_SHIFL - Phosphate acetyltransferase OS=Shigella flexneri GN=pta PE=3 SV=2 gi\|157161785, gi... - gi\|157161785\|ref\|YP_001459103.1\| phosphate acetyltransferase [Escherichia coli HS], gi\|157067465\|gb\|... PTA_ECOLI - Phosphate acetyltransferase (EC 2.3.1.8) (Phosphotransacetylase) - Escherichia coli gi\|157158227, gi... - gi\|157158227\|ref\|YP_001463641.1\| phosphate acetyltransferase [Escherichia coli E24377A], gi\|15708025... EG20173 - phosphate acetyltransferase / Phosphate acetyltransferase, produces acetyl phosphate; creBC regulon;... gi\|24052735, gi\|... - gi\|24113669\|ref\|NP_708179.1\| phosphate acetyltransferase [Shigella flexneri 2a str. 301], gi\|2405273... gi\|30041978, gi\|... - gi\|30063723\|ref\|NP_837894.1\| phosphate acetyltransferase [Shigella flexneri 2a str. 2457T], gi\|30041... gi\|110806260, gi... - gi\|110806260\|ref\|YP_689780.1\| phosphate acetyltransferase [Shigella flexneri 5 str. 8401], gi\|110615... EG20173 - phosphate acetyltransferase / Phosphate acetyltransferase, produces acetyl phosphate; creBC regulon;... gi\|238862023, gi... - gi\|238901472\|ref\|YP_002927268.1\| phosphate acetyltransferase [Escherichia coli BW2952], gi\|238862023... gi\|253772779, gi... - gi\|254289067\|ref\|YP_003054815.1\| phosphate acetyltransferase [Escherichia coli BL21(DE3)], gi\|253978... gi\|251785657, gi... - gi\|251785657\|ref\|YP_002999961.1\| hypothetical protein B21_02182 [Escherichia coli BL21], gi\|24237793... gi\|254162306, gi... - gi\|254162306\|ref\|YP_003045414.1\| phosphate acetyltransferase [Escherichia coli B str. REL606], gi\|25...	0.0	[1..713]	[1..714]
gi\|218428021, gi... - gi\|218690457\|ref\|YP_002398669.1\| phosphate acetyltransferase [Escherichia coli ED1a], gi\|218428021\|e... gi\|218559210, gi... - gi\|218559210\|ref\|YP_002392123.1\| phosphate acetyltransferase [Escherichia coli S88], gi\|218365979\|em... gi\|91211593, gi\|... - gi\|91211593\|ref\|YP_541579.1\| phosphate acetyltransferase [Escherichia coli UTI89], gi\|91073167\|gb\|AB... gi\|26248686, gi\|... - gi\|26248686\|ref\|NP_754726.1\| phosphate acetyltransferase [Escherichia coli CFT073], gi\|26109091\|gb\|A...	0.0	[1..713]	[1..714]
gi\|82777705, gi\|... - gi\|82777705\|ref\|YP_404054.1\| phosphate acetyltransferase [Shigella dysenteriae Sd197], gi\|81241853\|g...	0.0	[1..713]	[1..714]
gi\|1359438, gi\|1... - gi\|1359438\|dbj\|BAA04502.1\| phosphoacetyltransferase [Escherichia coli], pir\|\|JX0357 phosphate acetyl...	0.0	[1..713]	[1..714]
gi\|81246187, gi\|... - gi\|82544776\|ref\|YP_408723.1\| phosphate acetyltransferase [Shigella boydii Sb227], gi\|81246187\|gb\|ABB...	0.0	[1..713]	[1..714]
gi\|110642501, gi... - gi\|110642501\|ref\|YP_670231.1\| phosphate acetyltransferase [Escherichia coli 536], gi\|110344093\|gb\|AB... gi\|191170103, gi... - gi\|191170103\|ref\|ZP_03031657.1\| phosphate acetyltransferase [Escherichia coli F11], gi\|190909619\|gb\|...	0.0	[1..713]	[1..714]
gi\|229701798, gi... - gi\|229895312\|ref\|ZP_04510486.1\| phosphate acetyltransferase [Yersinia pestis Pestoides A], gi\|229701... gi\|229694476, gi... - gi\|229838110\|ref\|ZP_04458269.1\| phosphate acetyltransferase [Yersinia pestis biovar Orientalis str. ... Q668Y9\|Q668Y9_YERPS - Phosphate acetyltransferase - Yersinia pseudotuberculosis gi\|229688220, gi... - gi\|229898672\|ref\|ZP_04513817.1\| phosphate acetyltransferase [Yersinia pestis biovar Orientalis str. ... gi\|149365527, gi... - gi\|149365527\|ref\|ZP_01887562.1\| phosphate acetyltransferase [Yersinia pestis CA88-4125], gi\|14929194... gi\|145599254, gi... - gi\|145599254\|ref\|YP_001163330.1\| phosphate acetyltransferase [Yersinia pestis Pestoides F], gi\|14521... gi\|22125515, gi\|... - gi\|22125515\|ref\|NP_668938.1\| phosphate acetyltransferase [Yersinia pestis KIM], gi\|21958413\|gb\|AAM85... PTA_YERPE - Phosphate acetyltransferase OS=Yersinia pestis GN=pta PE=3 SV=1 gi\|229902671, gi... - gi\|229902671\|ref\|ZP_04517788.1\| phosphate acetyltransferase [Yersinia pestis Nepal516], gi\|229680118... gi\|51596917, gi\|... - gi\|51596917\|ref\|YP_071108.1\| phosphate acetyltransferase [Yersinia pseudotuberculosis IP 32953], gi\|... gi\|108779964, gi... - gi\|108808051\|ref\|YP_651967.1\| phosphate acetyltransferase [Yersinia pestis Antiqua], gi\|108779964\|gb... gi\|45437031, gi\|... - gi\|45442167\|ref\|NP_993706.1\| phosphate acetyltransferase [Yersinia pestis biovar Microtus str. 91001... gi\|167398784, gi... - gi\|167398784\|ref\|ZP_02304308.1\| phosphate acetyltransferase [Yersinia pestis biovar Antiqua str. UG0... gi\|115348264, gi... - gi\|218929653\|ref\|YP_002347528.1\| phosphate acetyltransferase [Yersinia pestis CO92], gi\|16122785\|ref... gi\|165992827, gi... - gi\|166008445\|ref\|ZP_02229343.1\| phosphate acetyltransferase [Yersinia pestis biovar Antiqua str. E19... gi\|186895997, gi... - gi\|186895997\|ref\|YP_001873109.1\| phosphate acetyltransferase [Yersinia pseudotuberculosis PB1/+], gi... gi\|152959769, gi... - gi\|153948274\|ref\|YP_001400421.1\| phosphate acetyltransferase [Yersinia pseudotuberculosis IP 31758],... gi\|170023791, gi... - gi\|170023791\|ref\|YP_001720296.1\| phosphate acetyltransferase [Yersinia pseudotuberculosis YPIII], gi...	0.0	[1..711]	[1..711]
gi\|91793762, gi\|... - gi\|91793762\|ref\|YP_563413.1\| phosphate acetyltransferase [Shewanella denitrificans OS217], gi\|917157...	0.0	[1..714]	[1..715]

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Predicted Domain #1

Region A:
Residues: [1-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRIIMLIPT GTSVGLTSVS LGVIRAMERK GVRLSVFKPI AQPRAGGDAP DQTTTIVRAN  60
   61 STLPAAEPLK MSHVESLLSS NQKDVLMEEI IANYHANTKD AEVVLVEGLV PTRKHQFAQS 120
  121 LNYEIAKTLN AEIVFVMSQG TDTPEQLNER IELTRSSFGG AKNTNITGVI INKLNAPVDE 180
  181 QGRTRPDLSE IFDDSSKAQV IKIDPAKLQE SSPLPVLGAV PWSFDLIATR AIDMARHLNA 240
  241 TIINEGDIKT RRVKSVTFCA RSIPHMLEHF RAGSLLVTSA DRPDVLVAAC LAAMNGVEIG 300
  301 ALLLTGGYEM DARISKLCER AFATGLPVFM VNTNTWQTSL SLQSFNLEVP VDDHERIEKV 360
  361 QEYVANYVNA DWIESLTATS ERSR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.0
Match:	2a9fA
Description:	Crystal structure of a putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating))
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [385-714]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RLSPPAFRYQ LTELARKAGK RVVLPEGDEP RTVKAAAICA ERGIATCVLL GNPDEINRVA  60
   61 ASQGVELGAG IEIVDPEVVR ESYVARLVEL RKSKGMTEPV AREQLEDNVV LGTLMLEQDE 120
  121 VDGLVSGAVH TTANTIRPPL QLIKTAPGSS LVSSVFFMLL PEQVYVYGDC AINPDPTAEQ 180
  181 LAEIAIQSAD SAIAFGIEPR VAMLSYSTGT SGAGSDVEKV REATRLAQEK RPDLMIDGPL 240
  241 QYDAAVMADV AKSKAPNSPV AGRATVFIFP DLNTGNTTYK AVQRSADLIS IGPMLQGMRK 300
  301 PVNDLSRGAL VDDIVYTIAL TAIQASQQQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	92.522879
Match:	1r5jA
Description:	Crystal Structure of a Phosphotransacetylase from Streptococcus pyogenes
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
isocitrate dehydrogenase activity	4.07470589461733	bayes_pls_golite062009
isocitrate dehydrogenase (NAD+) activity	2.76980877987445	bayes_pls_golite062009
catalytic activity	2.71251959637136	bayes_pls_golite062009
isocitrate dehydrogenase (NADP+) activity	2.37654914320201	bayes_pls_golite062009
oxidoreductase activity	1.34383793575786	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	1.23338300186555	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	1.23134321553105	bayes_pls_golite062009
acetyltransferase activity	0.475874744828042	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: