YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|62179874, gi\|...
Organism:	Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|62179874, gi|....

Description	E-value	Query Range	Subject Range
gi\|91072569, gi\|... - gi\|91210995\|ref\|YP_540981.1\| methionine sulfoxide reductase B [Escherichia coli UTI89], gi\|91072569\|... gi\|226900486, gi... - gi\|237705729\|ref\|ZP_04536210.1\| peptide methionine sulfoxide reductase [Escherichia sp. 3_2_53FAA], ... gi\|117623948, gi... - gi\|117623948\|ref\|YP_852861.1\| methionine sulfoxide reductase B [Escherichia coli APEC O1], gi\|115513...	5.0E-66	[1..147]	[1..147]
gi\|26248037, gi\|... - gi\|26248037\|ref\|NP_754077.1\| methionine sulfoxide reductase B [Escherichia coli CFT073], gi\|26108440...	6.0E-66	[1..147]	[1..147]
MSRB_THEEB - Peptide methionine sulfoxide reductase MsrB OS=Thermosynechococcus elongatus (strain BP-1) GN=msrB P... MSRB_SYNEL - Peptide methionine sulfoxide reductase msrB OS=Synechococcus elongatus GN=msrB PE=3 SV=1	1.0E-64	[12..139]	[3..130]
gi\|111656942 - gi\|111656942\|ref\|ZP_01407760.1\| hypothetical protein SpneT_02001821 [Streptococcus pneumoniae TIGR4]	3.0E-63	[2..144]	[216..359]
gi\|115368847, gi... - gi\|115374180\|ref\|ZP_01461467.1\| peptide methionine sulfoxide reductase MsrB [Stigmatella aurantiaca ...	3.0E-63	[8..136]	[61..189]
gi\|225724305, gi... - gi\|225856354\|ref\|YP_002737865.1\| peptide methionine sulfoxide reductase MsrA/msrB [Streptococcus pne... gi\|225722082, gi... - gi\|225858488\|ref\|YP_002739998.1\| peptide methionine sulfoxide reductase MsrA/msrB [Streptococcus pne... gi\|66879653 - gi\|66879653\|ref\|ZP_00404670.1\| COG0225: Peptide methionine sulfoxide reductase [Streptococcus pneumo... gi\|25508388 - gi\|25508388\|pir\|\|A97944 peptide methionine sulfoxide reductase homolog [imported] - Streptococcus pn... gi\|183569878, gi... - gi\|183569878\|gb\|EDT90406.1\| peptide methionine sulfoxide reductase MsrA/msrB [Streptococcus pneumoni... gi\|15902621, gi\|... - gi\|15902621\|ref\|NP_358171.1\| bifunctional methionine sulfoxide reductase A/B protein [Streptococcus ... gi\|147765199, gi... - gi\|149010718\|ref\|ZP_01832089.1\| bifunctional methionine sulfoxide reductase A/B protein [Streptococc... gi\|183572966, gi... - gi\|183572966\|gb\|EDT93494.1\| peptide methionine sulfoxide reductase MsrA/msrB [Streptococcus pneumoni... gi\|147762715, gi... - gi\|149005775\|ref\|ZP_01829514.1\| bifunctional methionine sulfoxide reductase A/B protein [Streptococc... gi\|168492265, gi... - gi\|183573518\|gb\|EDT94046.1\| peptide methionine sulfoxide reductase MsrA/msrB [Streptococcus pneumoni... gi\|147928857, gi... - gi\|148992231\|ref\|ZP_01821954.1\| bifunctional methionine sulfoxide reductase A/B protein [Streptococc... gi\|168996394, gi... - gi\|169833892\|ref\|YP_001694133.1\| peptide methionine sulfoxide reductase MsrA/msrB [Streptococcus pne... gi\|148989032, gi... - gi\|148989032\|ref\|ZP_01820432.1\| bifunctional methionine sulfoxide reductase A/B protein [Streptococc... gi\|182628920, gi... - gi\|182683586\|ref\|YP_001835333.1\| bifunctional methionine sulfoxide reductase A/B protein [Streptococ... gi\|194357165, gi... - gi\|194397498\|ref\|YP_002037316.1\| peptide methionine sulfoxide reductase MsrA/msrB [Streptococcus pne...	3.0E-63	[2..144]	[216..359]
gi\|86558601, gi\|... - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Synechococcus sp. JA-2-3B'a(2-13)], g... gi\|86610059 - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Cyanobacteria bacterium Yellowstone B...	4.0E-63	[8..139]	[34..165]
gi\|197362646, gi... - gi\|197362646\|ref\|YP_002142283.1\| methionine sulfoxide reductase B [Salmonella enterica subsp. enteri... gi\|56413723, gi\|... - gi\|56413723\|ref\|YP_150798.1\| methionine sulfoxide reductase B [Salmonella enterica subsp. enterica s...	7.0E-63	[7..147]	[2..142]
MSRAB_HAEIN - Peptide methionine sulfoxide reductase MsrA/MsrB OS=Haemophilus influenzae (strain ATCC 51907 / DSM ... MSRAB_HAEIN, MSA... - Peptide methionine sulfoxide reductase msrA/msrB OS=Haemophilus influenzae GN=msrAB PE=1 SV=1, (P452...	1.0E-62	[2..145]	[198..342]
gi\|46133494 - gi\|46133494\|ref\|ZP_00157293.2\| COG0225: Peptide methionine sulfoxide reductase [Haemophilus influenz... gi\|145638930, gi... - gi\|145638930\|ref\|ZP_01794538.1\| bifunctional methionine sulfoxide reductase A/B protein [Haemophilus...	1.0E-62	[2..145]	[198..342]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFKVRCEQ MANQPSAEEL KKKLSEMQFY VTQDRGTEPP FTGRLLHNKR DGVYHCLVCD  60
   61 TPLFHSHTKY DSGCGWPSFY QPVSEEAIRY IDDFSHGMQR VEIRCGNCDA HLGHVFPDGP 120
  121 QPTGERYCVN SASLAFSDEK NGDQLKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.69897
Match:	1l1dA
Description:	C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor	5.90194589149201	bayes_pls_golite062009
protein-methionine-R-oxide reductase activity	5.64196103816384	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	3.02342037380774	bayes_pls_golite062009
peptide-methionine-(S)-S-oxide reductase activity	1.80676476343543	bayes_pls_golite062009
binding	1.67290562818139	bayes_pls_golite062009
catalytic activity	0.566791077255496	bayes_pls_golite062009
nucleic acid binding	0.555078494441175	bayes_pls_golite062009
ion binding	0.415760364192452	bayes_pls_golite062009
cation binding	0.404651661251597	bayes_pls_golite062009
metal ion binding	0.404651661251597	bayes_pls_golite062009
DNA binding	0.215568693193579	bayes_pls_golite062009
transcription regulator activity	0.183261590647643	bayes_pls_golite062009
protein binding	0.0755837372617499	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: