YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254849514, gi...
Organism:	Vibrio cholerae MO10
Length:	269 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254849514, gi....

Description	E-value	Query Range	Subject Range
DAPB_PELCD - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) G...	305.0	[0..1]	[266..1]
DAPB_HAHCH - 4-hydroxy-tetrahydrodipicolinate reductase OS=Hahella chejuensis (strain KCTC 2396) GN=dapB PE=3 SV=...	305.0	[0..1]	[266..1]
DAPB_PSEE4 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas entomophila (strain L48) GN=dapB PE=3 SV=1 gi\|95109001 - gi\|95109001\|emb\|CAK13697.1\| dihydrodipicolinate reductase [Pseudomonas entomophila L48]	304.0	[0..1]	[266..1]
gi\|213928510, gi... - gi\|213966660\|ref\|ZP_03394811.1\| dihydrodipicolinate reductase [Pseudomonas syringae pv. tomato T1], ... DAPB_PSESM - Dihydrodipicolinate reductase OS=Pseudomonas syringae pv. tomato GN=dapB PE=3 SV=1 DAPB_PSESM - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=dap...	304.0	[0..1]	[267..1]
DAPB_PSEPK - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain KT2440) GN=dapB PE=3 SV=1	303.0	[0..1]	[266..1]
gi\|121547078, gi... - gi\|121591073\|ref\|ZP_01678385.1\| dihydrodipicolinate reductase [Vibrio cholerae 2740-80], gi\|12154707... DAPB_VIBC3 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Class... gi\|153802032, gi... - gi\|153802032\|ref\|ZP_01956618.1\| dihydrodipicolinate reductase [Vibrio cholerae MZO-3], gi\|124122442\|... gi\|153225219, gi... - gi\|153225219\|ref\|ZP_01954720.1\| dihydrodipicolinate reductase [Vibrio cholerae MAK 757], gi\|12411734... tr\|A0A085PQM1\|A0... - 4-hydroxy-tetrahydrodipicolinate reductase OS=Vibrio cholerae GN=dapB PE=3 SV=1, 4-hydroxy-tetrahydr... gi\|121630159, gi... - gi\|75816493\|ref\|ZP_00746962.1\| COG0289: Dihydrodipicolinate reductase [Vibrio cholerae V52], gi\|1217... gi\|254226143, gi... - gi\|75817965\|ref\|ZP_00748208.1\| COG0289: Dihydrodipicolinate reductase [Vibrio cholerae V51], gi\|2542... gi\|126509470, gi... - gi\|153819992\|ref\|ZP_01972659.1\| dihydrodipicolinate reductase [Vibrio cholerae NCTC 8457], gi\|126509... gi\|153828832, gi... - gi\|153828832\|ref\|ZP_01981499.1\| dihydrodipicolinate reductase [Vibrio cholerae 623-39], gi\|148875708... DAPB_VIBCM - 4-hydroxy-tetrahydrodipicolinate reductase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=dapB PE=...	302.0	[0..1]	[269..1]
DAPB_PSEU2 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=da...	301.0	[0..1]	[267..1]
tr\|I7AV70\|I7AV70... - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain DOT-T1E) GN=dapB PE=3 SV=1 tr\|E4R634\|E4R634... - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain BIRD-1) GN=dapB PE=3 SV=1 DAPB_PSEP1 - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=dapB P...	300.0	[0..1]	[266..1]
DAPB_PSEAJ - 4-hydroxy-tetrahydrodipicolinate reductase OS=Pseudomonas amygdali pv. tabaci GN=dapB PE=3 SV=1	300.0	[0..1]	[267..1]
gi\|149748179, gi... - gi\|153838416\|ref\|ZP_01991083.1\| dihydrodipicolinate reductase [Vibrio parahaemolyticus AQ3810], gi\|1... DAPB_VIBPA - 4-hydroxy-tetrahydrodipicolinate reductase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 22... DAPB_VIBPA - Dihydrodipicolinate reductase OS=Vibrio parahaemolyticus GN=dapB PE=3 SV=1	300.0	[0..1]	[269..1]

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Predicted Domain #1

Region A:
Residues: [1-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRIAIAGAA GRMGRNLVKA THQNPLSELG AGSERPESSL VGVDIGELCG IGKQGIVLVD  60
   61 NLEQAVEQFD VIIDFTAPAS TLANLALCEQ HGKKLVIGTT GFTDAQRQTI EQAAKKIPIV 120
  121 MAPNYSVGVN LVFKLLEKAA KVMGDYCDIE IIEAHHRHKV DAPSGTAIGM GEAIAHAMGN 180
  181 QLSDVAVYAR EGITGERSRN EIGFATIRAG DIIGEHTAMF ADIGERVEIT HKATDRMTFA 240
  241 NGAVKAAIWL AEQPAGFYTM IDVLGLNDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.522879
Match:	1arzA
Description:	Dihydrodipicolinate reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	2.60548927745815	bayes_pls_golite062009
catalytic activity	2.54843319568228	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	1.54909195188343	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	0.841370849960815	bayes_pls_golite062009
saccharopine dehydrogenase activity	0.495113665163626	bayes_pls_golite062009
N-acetyl-gamma-glutamyl-phosphate reductase activity	0.0651785123513661	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: