YRC Public Data Repository - Protein Structure Prediction

Protein:	XGPT_VIBC3
Organism:	Vibrio cholerae O395
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XGPT_VIBC3.

Description	E-value	Query Range	Subject Range
gi\|224354 - gi\|224354\|prf\|\|1102210A protein gpt	146.0	[0..1]	[153..1]
gi\|90579862, gi\|... - gi\|90579862\|ref\|ZP_01235670.1\| xanthine phosphoribosyltransferase [Vibrio angustum S14], gi\|90438747...	138.0	[0..1]	[152..1]
gi\|89073177, gi\|... - gi\|89073177\|ref\|ZP_01159716.1\| xanthine phosphoribosyltransferase [Photobacterium sp. SKA34], gi\|890...	136.0	[0..1]	[152..1]
XGPT_DESAG - Xanthine phosphoribosyltransferase OS=Desulfovibrio alaskensis (strain G20) GN=gpt PE=3 SV=1	135.0	[0..2]	[154..8]
XGPT_MANSM - Xanthine phosphoribosyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=gpt PE=3 SV=...	134.0	[0..1]	[152..1]
XGPT_SALTI - Xanthine phosphoribosyltransferase OS=Salmonella typhi GN=gpt PE=3 SV=1 gi\|204323856, gi... - gi\|204927191\|ref\|ZP_03218393.1\| xanthine phosphoribosyltransferase [Salmonella enterica subsp. enter... XGPT_SALTI - Xanthine phosphoribosyltransferase OS=Salmonella typhi GN=gpt PE=3 SV=1 XGPT_SALG2 - Xanthine phosphoribosyltransferase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=gpt PE=3... XGPT_SALEP - Xanthine phosphoribosyltransferase OS=Salmonella enteritidis PT4 (strain P125109) GN=gpt PE=3 SV=1 gi\|213161391 - gi\|213161391\|ref\|ZP_03347101.1\| xanthine-guanine phosphoribosyltransferase [Salmonella enterica subs... gi\|16759312 - gi\|16759312\|ref\|NP_454929.1\| xanthine-guanine phosphoribosyltransferase [Salmonella enterica subsp. ... gi\|197242926, gi... - gi\|197264671\|ref\|ZP_03164745.1\| xanthine phosphoribosyltransferase [Salmonella enterica subsp. enter... XGPT_SALPK - Xanthine phosphoribosyltransferase OS=Salmonella paratyphi A (strain AKU_12601) GN=gpt PE=3 SV=1 XGPT_SALTY - Xanthine phosphoribosyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) G... XGPT_SALDC - Xanthine phosphoribosyltransferase OS=Salmonella dublin (strain CT_02021853) GN=gpt PE=3 SV=1 gi\|29142915, gi\|... - gi\|29142915\|ref\|NP_806257.1\| xanthine-guanine phosphoribosyltransferase [Salmonella enterica subsp. ... gi\|200389461, gi... - gi\|200389461\|ref\|ZP_03216072.1\| xanthine phosphoribosyltransferase [Salmonella enterica subsp. enter... XGPT_SALHS - Xanthine phosphoribosyltransferase OS=Salmonella heidelberg (strain SL476) GN=gpt PE=3 SV=1 gi\|194458952, gi... - gi\|194472588\|ref\|ZP_03078572.1\| xanthine phosphoribosyltransferase [Salmonella enterica subsp. enter... XGPT_SALSV - Xanthine phosphoribosyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=gpt PE=3 SV=1 gi\|238913293 - gi\|238913293\|ref\|ZP_04657130.1\| xanthine-guanine phosphoribosyltransferase [Salmonella enterica subs... XGPT_SALA4 - Xanthine phosphoribosyltransferase OS=Salmonella agona (strain SL483) GN=gpt PE=3 SV=1 gi\|168261268, gi... - gi\|205349890\|gb\|EDZ36521.1\| xanthine phosphoribosyltransferase [Salmonella enterica subsp. enterica ... gi\|195631763, gi... - gi\|195631763\|gb\|EDX50283.1\| xanthine phosphoribosyltransferase [Salmonella enterica subsp. enterica ... XGPT_SALCH - Xanthine phosphoribosyltransferase OS=Salmonella choleraesuis (strain SC-B67) GN=gpt PE=3 SV=1 gi\|168819092, gi... - gi\|205344021\|gb\|EDZ30785.1\| xanthine phosphoribosyltransferase [Salmonella enterica subsp. enterica ... XGPT_SALPA - Xanthine phosphoribosyltransferase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=gpt PE=3... XGPT_SALNS - Xanthine phosphoribosyltransferase OS=Salmonella newport (strain SL254) GN=gpt PE=3 SV=1 XGPT_SALPC - Xanthine phosphoribosyltransferase OS=Salmonella paratyphi C (strain RKS4594) GN=gpt PE=3 SV=1 gi\|213649628 - gi\|213649628\|ref\|ZP_03379681.1\| xanthine-guanine phosphoribosyltransferase [Salmonella enterica subs... gi\|213852527 - gi\|213852527\|ref\|ZP_03382059.1\| xanthine-guanine phosphoribosyltransferase [Salmonella enterica subs... gi\|213979993 - gi\|213979993\|ref\|ZP_03407252.1\| xanthine-guanine phosphoribosyltransferase [Salmonella enterica subs... gi\|214001714 - gi\|214001714\|ref\|ZP_03412449.1\| xanthine-guanine phosphoribosyltransferase [Salmonella enterica subs... gi\|213418462 - gi\|213418462\|ref\|ZP_03351528.1\| xanthine-guanine phosphoribosyltransferase [Salmonella enterica subs... XGPT_SALCH - Xanthine phosphoribosyltransferase OS=Salmonella choleraesuis GN=gpt PE=3 SV=1 gi\|213425144 - gi\|213425144\|ref\|ZP_03357894.1\| xanthine-guanine phosphoribosyltransferase [Salmonella enterica subs... XGPT_SALPA - Xanthine phosphoribosyltransferase OS=Salmonella paratyphi A GN=gpt PE=3 SV=1 gi\|213583863 - gi\|213583863\|ref\|ZP_03365689.1\| xanthine-guanine phosphoribosyltransferase [Salmonella enterica subs... gi\|213619323 - gi\|213619323\|ref\|ZP_03373149.1\| xanthine-guanine phosphoribosyltransferase [Salmonella enterica subs... XGPT_SALTY - Xanthine phosphoribosyltransferase OS=Salmonella typhimurium GN=gpt PE=3 SV=1 lcl\|NC_016856.1_... - [gene=gpt] [protein=xanthine-guanine phosphoribosyltransferase] [protein_id=YP_005235991.1] [locatio... XGPT_SALCH - Xanthine phosphoribosyltransferase OS=Salmonella choleraesuis GN=gpt PE=3 SV=1 XGPT_SALTY - Xanthine phosphoribosyltransferase OS=Salmonella typhimurium GN=gpt PE=3 SV=1 gi\|205328624, gi... - gi\|205328624\|gb\|EDZ15388.1\| xanthine phosphoribosyltransferase [Salmonella enterica subsp. enterica ... XGPT_SALPB - Xanthine phosphoribosyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gpt PE... gi\|168232272, gi... - gi\|205333367\|gb\|EDZ20131.1\| xanthine phosphoribosyltransferase [Salmonella enterica subsp. enterica ... XGPT_SALAR - Xanthine phosphoribosyltransferase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980... gi\|197288582, gi... - gi\|197288582\|gb\|EDY27959.1\| xanthine phosphoribosyltransferase [Salmonella enterica subsp. enterica ... gi\|205339803, gi... - gi\|205339803\|gb\|EDZ26567.1\| xanthine phosphoribosyltransferase [Salmonella enterica subsp. enterica ... XGPT_SALPB - Xanthine phosphoribosyltransferase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=gpt PE...	134.0	[0..1]	[152..1]
XGPT_ECOL5 - Xanthine phosphoribosyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=gpt PE=3 SV... XGPT_ECOL6 - Xanthine phosphoribosyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN... XGPT_ECOL6 - Xanthine phosphoribosyltransferase OS=Escherichia coli O6 GN=gpt PE=3 SV=1 XGPT_ECO27 - Xanthine phosphoribosyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=gpt PE=3 ... sp\|B7UJC6\|XGPT_ECO27 - Xanthine phosphoribosyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=gpt PE=3 ... gi\|191171457, gi... - gi\|75241690\|ref\|ZP_00725527.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|227884746, gi... - gi\|227884746\|ref\|ZP_04002551.1\| xanthine-guanine phosphoribosyltransferase [Escherichia coli 83972],... XGPT_ECO81 - Xanthine phosphoribosyltransferase OS=Escherichia coli O81 (strain ED1a) GN=gpt PE=3 SV=1	133.0	[0..1]	[152..1]
gi\|91225075, gi\|... - gi\|91225075\|ref\|ZP_01260297.1\| xanthine phosphoribosyltransferase [Vibrio alginolyticus 12G01], gi\|9... gi\|153837731, gi... - gi\|153837731\|ref\|ZP_01990398.1\| xanthine phosphoribosyltransferase [Vibrio parahaemolyticus AQ3810],... XGPT_VIBPA - Xanthine phosphoribosyltransferase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) G... XGPT_VIBPA - Xanthine phosphoribosyltransferase OS=Vibrio parahaemolyticus GN=gpt PE=3 SV=1	133.0	[0..1]	[154..1]
gi\|4902973, gi\|8... - gi\|89107111\|ref\|AP_000891.1\| guanine-hypoxanthine phosphoribosyltransferase [Escherichia coli str. K... gi\|13359722, gi\|... - gi\|15829519\|ref\|NP_308292.1\| xanthine-guanine phosphoribosyltransferase [Escherichia coli O157:H7 st... XGPT_SHIF8 - Xanthine phosphoribosyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=gpt PE=3 SV=1 XGPT_ECOBW - Xanthine phosphoribosyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=gpt PE=3 SV... gi\|242376068, gi... - gi\|251783795\|ref\|YP_002998099.1\| hypothetical protein B21_00236 [Escherichia coli BL21], gi\|24237606... XGPT_SHISS - Xanthine phosphoribosyltransferase OS=Shigella sonnei (strain Ss046) GN=gpt PE=3 SV=1 gi\|253774737, gi... - gi\|254287155\|ref\|YP_003052903.1\| xanthine phosphoribosyltransferase [Escherichia coli BL21(DE3)], gi... XGPT_DESVH - (Q72D63) Xanthine phosphoribosyltransferase (EC 2.4.2.22) (Xanthine-guanine phosphoribosyltransferas... XGPT_ECOLC - Xanthine phosphoribosyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=gpt... XGPT_SHIFL - Xanthine phosphoribosyltransferase OS=Shigella flexneri GN=gpt PE=3 SV=1 gi\|189355753, gi... - gi\|189355753\|gb\|EDU74172.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC4401... gi\|595749, gi\|20... - gi\|595753\|gb\|AAC53601.1\| xanthine-guanine phosphoribosyl transferase [unidentified cloning vector], ... gi\|168750222, gi... - gi\|188015561\|gb\|EDU53683.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC4113... EG10414 - xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase / Xanthine phosphorib... gi\|5640089 - gi\|5640089\|emb\|CAB51567.1\| Xanthine-guanine phosphoribosyl transferase [Expression vector pCDPT] gi\|189361073, gi... - gi\|189361073\|gb\|EDU79492.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC4486... gi\|24111728, gi\|... - gi\|24111728\|ref\|NP_706238.1\| xanthine-guanine phosphoribosyltransferase [Shigella flexneri 2a str. 3... gi\|189366391, gi... - gi\|189366391\|gb\|EDU84807.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC4501... gi\|30040099, gi\|... - gi\|30061855\|ref\|NP_836026.1\| xanthine-guanine phosphoribosyltransferase [Shigella flexneri 2a str. 2... XGPT_ECO57 - Xanthine phosphoribosyltransferase OS=Escherichia coli O157:H7 GN=gpt PE=3 SV=1 EG10414 - xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase / Xanthine phosphorib... gi\|12513012, gi\|... - gi\|15799943\|ref\|NP_285955.1\| xanthine-guanine phosphoribosyltransferase [Escherichia coli O157:H7 ED... gi\|208819170, gi... - gi\|208819170\|ref\|ZP_03259490.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC... gi\|208814068, gi... - gi\|208814068\|ref\|ZP_03255397.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC... XGPT_ECOSE - Xanthine phosphoribosyltransferase OS=Escherichia coli (strain SE11) GN=gpt PE=3 SV=1 XGPT_ECO5E - Xanthine phosphoribosyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=gpt PE=3 SV... XGPT_ECO8A - Xanthine phosphoribosyltransferase OS=Escherichia coli O8 (strain IAI1) GN=gpt PE=3 SV=1 gi\|217325220, gi... - gi\|217325220\|ref\|ZP_03441304.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. TW... XGPT_ECOLU - Xanthine phosphoribosyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=gpt PE... XGPT_ECO55 - Xanthine phosphoribosyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=gpt PE=3 SV=1 XGPT_SHIDS - Xanthine phosphoribosyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gpt PE=3 SV=... gi\|124501708, gi... - gi\|124526652\|ref\|ZP_01698561.1\| Xanthine phosphoribosyltransferase [Escherichia coli B], gi\|12450170... gi\|188999614, gi... - gi\|188999614\|gb\|EDU68600.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC4076... XGPT_SHIBS - Xanthine phosphoribosyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=gpt PE=3 SV=1 gi\|187768393, gi... - gi\|187768393\|gb\|EDU32237.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC4196... gi\|75258759, gi\|... - gi\|75258759\|ref\|ZP_00730149.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|189377305, gi... - gi\|189377305\|gb\|EDU95721.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC508]... gi\|188493402, gi... - gi\|75513576\|ref\|ZP_00735967.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|168789711, gi... - gi\|189370733\|gb\|EDU89149.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC869]... XGPT_ECOSM - Xanthine phosphoribosyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=gpt PE=3 SV=1 XGPT_ECODH - Xanthine phosphoribosyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=gpt PE=3 SV=1 gi\|208726936, gi... - gi\|208807135\|ref\|ZP_03249472.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC... gi\|195938641 - gi\|195938641\|ref\|ZP_03084023.1\| xanthine-guanine phosphoribosyltransferase [Escherichia coli O157:H7... gi\|83586314, gi\|... - gi\|83586314\|ref\|ZP_00924949.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|253972253, gi... - gi\|254160352\|ref\|YP_003043460.1\| xanthine phosphoribosyltransferase [Escherichia coli B str. REL606]... XGPT_ECO24 - Xanthine phosphoribosyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gpt PE=3 ... gi\|254791398, gi... - gi\|254791398\|ref\|YP_003076235.1\| guanine-xanthine phosphoribosyltransferase [Escherichia coli O157:H... gi\|83570394, gi\|... - gi\|83570394\|ref\|ZP_00921839.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|190904225, gi... - gi\|75231162\|ref\|ZP_00717584.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|192958021, gi... - gi\|75237304\|ref\|ZP_00721351.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... XGPT_ECOHS - Xanthine phosphoribosyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=gpt PE=3 SV=1 XGPT_ECOLI - Xanthine phosphoribosyltransferase (EC 2.4.2.22) (Xanthine-guanine phosphoribosyltransferase) (XGPRT... gi\|194427540, gi... - gi\|75211194\|ref\|ZP_00711301.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-...	133.0	[0..1]	[152..1]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKFVITWD NMQHYCRELA QRQMPAEQWK GILGVSRGGL VPAAILAREL GIRYVDTVCI  60
   61 SSYDHDHQRD MTVLKAPEHD GEGFLIIDDL VDSGDTARKI REMYPKAKFV TVCAKPAGKD 120
  121 LVDEYVVDIP QDTWIEQPWD MVLSYVEPVN RKQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	1a95A
Description:	Xantine-guanine PRTase (XPRTase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
adenine phosphoribosyltransferase activity	4.07252508868782	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.91023158228049	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	3.89356447922614	bayes_pls_golite062009
transferase activity	2.73727660668741	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.53679639481311	bayes_pls_golite062009
catalytic activity	2.30431811394775	bayes_pls_golite062009
uracil phosphoribosyltransferase activity	2.20660111782431	bayes_pls_golite062009
amidophosphoribosyltransferase activity	1.51802880667162	bayes_pls_golite062009
purine binding	1.3774977535406	bayes_pls_golite062009
nucleobase binding	1.28671115202467	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	1.18255665419929	bayes_pls_golite062009
diphosphotransferase activity	0.882962388159961	bayes_pls_golite062009
xanthine phosphoribosyltransferase activity	0.607713614998293	bayes_pls_golite062009
orotate phosphoribosyltransferase activity	0.148898393751978	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: