YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57238268, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	300 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57238268, gi|....

Description	E-value	Query Range	Subject Range
gi\|73988677 - gi\|73988677\|ref\|XP_534084.2\| PREDICTED: similar to L-lactate dehydrogenase A chain (LDH-A) (LDH musc...	282.0	[0..2]	[297..51]
gi\|67968888 - gi\|67968888\|dbj\|BAE00801.1\| unnamed protein product [Macaca fascicularis] gi\|109107092 - gi\|109107092\|ref\|XP_001084747.1\| PREDICTED: lactate dehydrogenase A isoform 6 [Macaca mulatta]	281.0	[0..2]	[297..51]
gi\|17368677, gi\|... - gi\|17368677\|sp\|Q9BE24\|LDHA_MACFA L-lactate dehydrogenase A chain (LDH-A) (LDH muscle subunit) (LDH-M...	279.0	[0..2]	[297..22]
LDHA_RAT - L-lactate dehydrogenase A chain OS=Rattus norvegicus GN=Ldha PE=1 SV=1	278.0	[0..2]	[297..22]
gi\|55249958 - gb\|AAH86251.1\| Unknown (protein for MGC:98768) [Xenopus laevis] LDHA_MOUSE - L-lactate dehydrogenase A chain OS=Mus musculus GN=Ldha PE=1 SV=3	278.0	[0..2]	[297..22]
LDHA - lactate dehydrogenase A	278.0	[0..2]	[297..21]
gi\|60653061, gi\|... - gi\|60653061\|gb\|AAX29225.1\| lactate dehydrogenase A [synthetic construct], gi\|60653059\|gb\|AAX29224.1\|...	277.0	[0..2]	[297..22]

Back

Predicted Domain #1

Region A:
Residues: [1-300]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKITVIGAGN VGSSVAYALI LREIANEIVL VDINEDLLYA KELELTQSIA ALNLNIDLLC  60
   61 TKDYTHTKNS DIVLFSAGFA RKDGQSREEL LQLNTSIMLD CAKKIKDFTE DPLFIILTNP 120
  121 VDFLLNTLYE SGIFSSKKII AMAGVLDNAR FKYELAKKLN VKMSRVDTRL IGFHNDDMVL 180
  181 VKSYASVKNK NISEFLNEEE FEDLENEVKT GGAKVIKHLK TSAYLAPASA CIRMLESIRS 240
  241 GEFLPMSVIL HGEFGVQNKA LGVMARLGLE GVIEIMKMDL SLQEKDKLEK SLIKYQYKGE 300
  301

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.69897
Match:	1guzA
Description:	Malate dehydrogenase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits