YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57167067, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	281 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57167067, gi|....

Description	E-value	Query Range	Subject Range
gi\|39983450, gi\|... - gi\|39996569\|ref\|NP_952520.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Geobacter sulfur...	237.0	[0..1]	[270..1]
gi\|110602061, gi... - gi\|222055756\|ref\|YP_002538118.1\| thiamine pyrophosphate protein domain protein TPP-binding [Geobacte...	237.0	[0..1]	[270..1]
gi\|107836768, gi... - gi\|108562995\|ref\|YP_627311.1\| 2-oxoglutarate-acceptor oxidoreductase subunit OorB [Helicobacter pylo...	236.0	[0..1]	[272..1]
gi\|4155085, gi\|1... - gi\|4155085\|gb\|AAD06120.1\| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Helicobacter pylori J99], gi\|156... gi\|7431594 - pir\|\|H71919 chain of 2-oxoglutarate oxidoreductase - Helicobacter pylori (strain J99)	236.0	[0..1]	[272..1]
gi\|7427729 - pir\|\|F64593 pyruvate synthase (EC 1.2.7.1) beta chain - Helicobacter pylori (strain 26695) gi\|15645215, gi\|... - gi\|2313708\|gb\|AAD07655.1\| ferredoxin oxidoreductase, beta subunit [Helicobacter pylori 26695], gi\|15... gi\|216945921, gi... - gi\|217032354\|ref\|ZP_03437849.1\| hypothetical protein HPB128_25g2 [Helicobacter pylori B128], gi\|2169... gi\|254001328, gi... - gi\|254779417\|ref\|YP_003057522.1\| 2-oxoglutarate oxidoreductase OorB ferredoxin subunit (2-oxoglutara... gi\|217033536, gi... - gi\|217033536\|ref\|ZP_03438965.1\| hypothetical protein HP9810_905g55 [Helicobacter pylori 98-10], gi\|2... gi\|210134792, gi... - gi\|210134792\|ref\|YP_002301231.1\| 2-oxoglutarate oxidoreductase OorB subunit [Helicobacter pylori P12...	235.0	[0..1]	[272..1]
gi\|88914985, gi\|... - gi\|88938272\|ref\|ZP_01143748.1\| keto/oxoacid ferredoxin oxidoreductase, beta subunit [Geobacter urani...	235.0	[0..1]	[270..1]
gi\|57241285, gi\|... - gi\|57241285\|ref\|ZP_00369232.1\| Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein ...	235.0	[0..1]	[281..1]
gi\|78193830, gi\|... - gi\|78222575\|ref\|YP_384322.1\| 2-oxoglutarate ferredoxin oxidoreductase subunit beta [Geobacter metall...	234.0	[0..1]	[272..1]
gi\|71740191, gi\|... - gi\|71839376\|ref\|ZP_00679126.1\| 2-oxoglutarate synthase [Pelobacter propionicus DSM 2379], gi\|7174019...	233.0	[0..1]	[272..1]
gi\|57020704, gi\|... - gi\|57167582\|ref\|ZP_00366722.1\| ferredoxin oxidoreductase, beta subunit [Campylobacter coli RM2228], ...	232.0	[0..1]	[281..1]

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Predicted Domain #1

Region A:
Residues: [1-281]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNYDEYLR VDKMPTQWCW GCGDGVVLKC IIRAIEKLGW NMDDVCLVSG IGCSGRMSSY  60
   61 VNCNTVHTTH GRAIAYATGI KLANPSKHVI VVSGDGDTLA IGGNHTIHGC RRNIDLTHIV 120
  121 INNFIYGLTN SQTSPTTPKG FYTVTAQFGN IDPNFDACEL TKAAGASFVA RGNVIEANKL 180
  181 ENLIYKALAH KGYSFVDVFS NCHINLGRKN KMGEAVAMLD WIKNRVVDKA KFESMDFEER 240
  241 KDKFPTGILH EDNSQPEYCH AYEEVRRAAK EKRMVDLGAL K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	1qgdA
Description:	Transketolase (TK), Pyr module; Transketolase (TK), PP module; Transketolase (TK), C-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.62581591393304	bayes_pls_golite062009
oxidoreductase activity	1.76278237247276	bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors	1.33446932713773	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: