YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57167356, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57167356, gi|....

Description	E-value	Query Range	Subject Range
gi\|221729033, gi... - gi\|222109589\|ref\|YP_002551853.1\| Ferritin Dps family protein [Diaphorobacter sp. TPSY], gi\|221729033... gi\|120604890, gi... - gi\|121592810\|ref\|YP_984706.1\| Ferritin, Dps family protein [Acidovorax sp. JS42], gi\|120604890\|gb\|AB...	142.0	[0..2]	[145..29]
gi\|111617982, gi... - gi\|120609295\|ref\|YP_968973.1\| Ferritin, Dps family protein [Acidovorax avenae subsp. citrulli AAC00-...	141.0	[0..2]	[145..31]
gi\|171992222, gi... - gi\|172059705\|ref\|YP_001807357.1\| Ferritin Dps family protein [Burkholderia ambifaria MC40-6], gi\|171... gi\|115350672, gi... - gi\|74017104\|ref\|ZP_00687729.1\| Ferritin and Dps [Burkholderia ambifaria AMMD], gi\|72610575\|gb\|EAO465...	141.0	[0..3]	[143..22]
gi\|67531073, gi\|... - gi\|67547638\|ref\|ZP_00425539.1\| Ferritin and Dps [Burkholderia vietnamiensis G4], gi\|67531073\|gb\|EAM2...	141.0	[0..3]	[143..22]
gi\|84356826, gi\|... - gi\|84356826\|ref\|ZP_00981660.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta... gi\|105891993, gi... - gi\|67658225\|ref\|ZP_00455598.1\| Ferritin and Dps [Burkholderia cenocepacia AU 1054], gi\|67094066\|gb\|E... gi\|116646840, gi... - gi\|67665887\|ref\|ZP_00463144.1\| Ferritin and Dps [Burkholderia cenocepacia HI2424], gi\|67100567\|gb\|EA... gi\|170732049, gi... - gi\|170732049\|ref\|YP_001763996.1\| Ferritin Dps family protein [Burkholderia cenocepacia MC0-3], gi\|16...	140.0	[0..3]	[143..22]
gi\|124895800, gi... - gi\|84360853\|ref\|ZP_00985541.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta...	138.0	[0..3]	[143..22]
gi\|17133280, gi\|... - gi\|17231637\|ref\|NP_488185.1\| hypothetical protein all4145 [Nostoc sp. PCC 7120], gi\|17133280\|dbj\|BAB... gi\|25318468 - pir\|\|AB2324 hypothetical protein all4145 [imported] - Nostoc sp. (strain PCC 7120)	138.0	[0..3]	[144..22]
gi\|186683867, gi... - gi\|23129807\|ref\|ZP_00111630.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta...	137.0	[0..3]	[144..22]
gi\|167825721 - gi\|167825721\|ref\|ZP_02457192.1\| DpsA [Burkholderia pseudomallei 9] gi\|167847206 - gi\|167847206\|ref\|ZP_02472714.1\| DpsA [Burkholderia pseudomallei B7210] gi\|226198407, gi... - gi\|226198407\|ref\|ZP_03793976.1\| ferritin-like domain protein [Burkholderia pseudomallei Pakistan 9],... gi\|167912439 - gi\|167912439\|ref\|ZP_02499530.1\| DpsA [Burkholderia pseudomallei 112] gi\|83677282, gi\|... - gi\|83677282\|ref\|ZP_00939036.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta... gi\|67680400, gi\|... - gi\|90290075\|ref\|ZP_01209756.1\| hypothetical protein Bpse17_02005232 [Burkholderia pseudomallei 1710a... gi\|194507277, gi... - gi\|67752475\|ref\|ZP_00491454.1\| COG0783: DNA-binding ferritin-like protein (oxidative damage protecta... gi\|76809702, gi\|... - gi\|76809702\|ref\|YP_334735.1\| DpsA [Burkholderia pseudomallei 1710b], gi\|76579155\|gb\|ABA48630.1\| DpsA...	137.0	[0..3]	[143..22]
gi\|188990601, gi... - gi\|188990601\|ref\|YP_001902611.1\| DNA-binding related protein [Xanthomonas campestris pv. campestris ... gi\|21232377, gi\|... - gi\|21232377\|ref\|NP_638294.1\| DNA-binding related protein [Xanthomonas campestris pv. campestris str.... gi\|66767491, gi\|... - gi\|66767491\|ref\|YP_242253.1\| DNA-binding related protein [Xanthomonas campestris pv. campestris str....	137.0	[0..2]	[144..39]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVTKQLLQM QADAHHLWVK FHNYHWNVKG LQFFSIHEYT EKAYEEMAEL FDSCAERVLQ  60
   61 LGEKAITCQK VLMENAKSPK VAKDCFTPLE VIELIKQDYE YLLAEFKKLN EAAEKESDTT 120
  121 TAAFAQENIA KYEKSLWMIG ATLQGACKM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	1jigA
Description:	Dodecameric ferritin homolog
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ferric iron binding	5.04257467619625	bayes_pls_golite062009
iron ion binding	2.78901512903296	bayes_pls_golite062009
transition metal ion binding	1.16341417841209	bayes_pls_golite062009
cation binding	1.04351481105022	bayes_pls_golite062009
metal ion binding	1.04351481105022	bayes_pls_golite062009
ion binding	1.03468252536661	bayes_pls_golite062009
binding	0.849367448640789	bayes_pls_golite062009
superoxide dismutase activity	0.65811896847693	bayes_pls_golite062009
oxidoreductase activity, acting on superoxide radicals as acceptor	0.65811896847693	bayes_pls_golite062009
catalytic activity	0.567768748506245	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: