YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57238414, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57238414, gi|....

Description	E-value	Query Range	Subject Range
TILS_LISIN - Bifunctional protein TilS/HprT OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=tilS/hprT PE=3 ... TILS_LISIN - Bifunctional protein tilS/hprT OS=Listeria innocua GN=tilS/hprT PE=3 SV=1	127.0	[0..2]	[146..477]
gi\|224500330 - gi\|224500330\|ref\|ZP_03668679.1\| hypothetical protein LmonF1_11939 [Listeria monocytogenes Finland 19... gi\|224503461 - gi\|224503461\|ref\|ZP_03671768.1\| hypothetical protein LmonFR_13287 [Listeria monocytogenes FSL R2-561... gi\|126941298, gi... - gi\|254900996\|ref\|ZP_05260920.1\| hypothetical protein LmonJ_14318 [Listeria monocytogenes J0161], gi\|... gi\|254913936, gi... - gi\|254913936\|ref\|ZP_05263948.1\| hypothetical protein LmonJ2_14108 [Listeria monocytogenes J2818], gi... gi\|133733948, gi... - gi\|254938274\|ref\|ZP_05269971.1\| hypothetical protein LmonF6_14141 [Listeria monocytogenes F6900], gi... gi\|47014358, gi\|... - gi\|47097258\|ref\|ZP_00234818.1\| conserved hypothetical protein/hypoxanthine phosphoribosyltransferase... TILS_LISMO - Bifunctional protein TilS/HprT OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) ... TILS_LISMO - Bifunctional protein tilS/hprT OS=Listeria monocytogenes GN=tilS/hprT PE=3 SV=1	125.0	[0..2]	[146..477]
TILS_LISMF - Bifunctional protein TilS/HprT OS=Listeria monocytogenes serotype 4b (strain F2365) GN=tilS/hprT PE=...	125.0	[0..2]	[146..477]
gi\|226222848, gi... - gi\|226222848\|ref\|YP_002756955.1\| hypothetical protein Lm4b_00217 [Listeria monocytogenes Clip81459],... gi\|47018468, gi\|... - gi\|47093161\|ref\|ZP_00230936.1\| conserved hypothetical protein/hypoxanthine phosphoribosyltransferase... gi\|21667249 - gi\|21667249\|gb\|AAM74001.1\|AF467001_2 YacA/HprT-like protein [Listeria monocytogenes] gi\|153200654, gi... - gi\|254933059\|ref\|ZP_05266418.1\| hypothetical protein LmonH_11532 [Listeria monocytogenes HPB2262], g...	124.0	[0..2]	[146..477]
gi\|90821520, gi\|... - gi\|90962326\|ref\|YP_536242.1\| hypoxanthine-guanine phosphoribosyltransferase [Lactobacillus salivariu...	118.0	[0..2]	[145..8]
HPRT_ENTFA - Hypoxanthine-guanine phosphoribosyltransferase OS=Enterococcus faecalis GN=hpt PE=3 SV=1 gi\|227072597, gi... - gi\|227520049\|ref\|ZP_03950098.1\| hypoxanthine-guanine phosphoribosyltransferase [Enterococcus faecali... HPRT_ENTFA - Hypoxanthine-guanine phosphoribosyltransferase OS=Enterococcus faecalis (strain ATCC 700802 / V583) ... gi\|227174967, gi... - gi\|227555910\|ref\|ZP_03985957.1\| hypoxanthine-guanine phosphoribosyltransferase [Enterococcus faecali... gi\|238857927, gi... - gi\|238857927\|ref\|ZP_04648156.1\| hypoxanthine phosphoribosyltransferase [Enterococcus faecalis TUSoD ...	118.0	[0..2]	[146..9]
gi\|54310268, gi\|... - gi\|54310268\|ref\|YP_131288.1\| hypoxanthine-guanine phosphoribosyltransferase [Photobacterium profundu...	116.0	[0..2]	[146..28]
gi\|90412013, gi\|... - gi\|90412013\|ref\|ZP_01220020.1\| hypoxanthine-guanine phosphoribosyltransferase [Photobacterium profun...	116.0	[0..2]	[146..7]
gi\|116098531, gi... - gi\|116333184\|ref\|YP_794711.1\| hypoxanthine-guanine phosphoribosyltransferase [Lactobacillus brevis A...	115.0	[0..2]	[147..8]
gi\|123441069, gi... - gi\|123441069\|ref\|YP_001005058.1\| hypoxanthine phosphoribosyltransferase [Yersinia enterocolitica sub... gi\|77977265 - gi\|77977265\|ref\|ZP_00832718.1\| COG0634: Hypoxanthine-guanine phosphoribosyltransferase [Yersinia int...	114.0	[0..2]	[146..7]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFYSYEEFK EDVKILAKEI KEDFNPDALL AIARGGMSLG HSLAVALKTR QLFALNSIHY  60
   61 DNTKKLDTIE IFNIPDLSKH KKILLIDDIV DSGESLAEIK KVLLEKFPHI ELKITTIFYK 120
  121 KTALLEPDFK VKEATEWVDF YWDINLD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.0
Match:	1j7jA
Description:	Hypoxanthine PRTase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring pentosyl groups	3.03016109611914	bayes_pls_golite062009
catalytic activity	2.67475805095976	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	2.53464204724265	bayes_pls_golite062009
transferase activity	2.23444207913717	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	1.38503156993515	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	0.824877195846631	bayes_pls_golite062009
amidophosphoribosyltransferase activity	0.80829945708854	bayes_pls_golite062009
diphosphotransferase activity	0.65239976014182	bayes_pls_golite062009
uracil phosphoribosyltransferase activity	0.52776253385781	bayes_pls_golite062009
adenine phosphoribosyltransferase activity	0.46065288387965	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: