YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237614, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237614, gi|....

Description	E-value	Query Range	Subject Range
gi\|37525837, gi\|... - gi\|37525837\|ref\|NP_929181.1\| flagella basal body P-ring formation protein FlgA precursor [Photorhabd...	201.0	[0..4]	[219..9]
gi\|82737704, gi\|... - gi\|82737704\|ref\|ZP_00900550.1\| flagella basal body P-ring formation protein FlgA [Pseudomonas putida...	199.0	[0..5]	[219..36]
gi\|77968586, gi\|... - gi\|78067841\|ref\|YP_370610.1\| Flageller protein FlgA [Burkholderia sp. 383], gi\|77968586\|gb\|ABB09966....	199.0	[0..18]	[219..217]
gi\|72612523, gi\|... - gi\|74013921\|ref\|ZP_00684550.1\| Flageller protein FlgA [Burkholderia ambifaria AMMD], gi\|72612523\|gb\|...	196.0	[0..18]	[219..232]
gi\|24986118, gi\|... - gi\|26991083\|ref\|NP_746508.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas puti...	195.0	[0..5]	[219..11]
gi\|77975730, gi\|... - gi\|77975730\|ref\|ZP_00831264.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia f...	194.0	[0..5]	[219..9]
gi\|108812487, gi... - gi\|108812487\|ref\|YP_648254.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis... gi\|108807169, gi... - gi\|108807169\|ref\|YP_651085.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis... gi\|145598614, gi... - gi\|145598614\|ref\|YP_001162690.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pes...	194.0	[0..36]	[219..68]
gi\|166210809, gi... - gi\|166210809\|ref\|ZP_02236844.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|166010841, gi... - gi\|166010841\|ref\|ZP_02231739.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|166961938, gi... - gi\|167420243\|ref\|ZP_02311996.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|167049407, gi... - gi\|167401018\|ref\|ZP_02306521.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|162352268, gi... - gi\|77636012\|ref\|ZP_00798090.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia p... gi\|167469716 - gi\|167469716\|ref\|ZP_02334420.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis F... gi\|167425844, gi... - gi\|167425844\|ref\|ZP_02317597.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|22126394, gi\|... - gi\|22126394\|ref\|NP_669817.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis ... gi\|45441413, gi\|... - gi\|45441413\|ref\|NP_992952.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis ... gi\|89105476, gi\|... - gi\|89105476\|ref\|ZP_01177995.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia p... gi\|165926043, gi... - gi\|165926043\|ref\|ZP_02221875.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b...	193.0	[0..36]	[219..71]
gi\|238799103, gi... - gi\|77960291\|ref\|ZP_00824170.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia m...	193.0	[0..2]	[219..17]
gi\|87305545, gi\|... - gi\|87305545\|ref\|ZP_01087699.1\| flagella basal body P-ring formation protein FlgA [Campylobacter jeju...	193.0	[0..1]	[220..1]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIFLTFFI VINYIQAASL EEIKTALAKE FRNNFPKIII SQIDLKITSL PKDFDQYEFL  60
   61 RIANGRFNQA QGFLRAEFKT PQNI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKNVFFRYFI QANLEVLKSE RAIKRGDKLG AFDYKSVLID FDKVPLNALT LDDVDNLVAK  60
   61 SNINKNAILR ANMFKTTALI RRNDPIIGVL SEANVDVLIE LVALQSANMG ERIRAKNKEG 120
  121 KVMQGIVVGK NRMIIQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.54
Match:	1wvoA
Description:	Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits