YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237614, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237614, gi|....

Description	E-value	Query Range	Subject Range
gi\|37525837, gi\|... - gi\|37525837\|ref\|NP_929181.1\| flagella basal body P-ring formation protein FlgA precursor [Photorhabd...	201.0	[0..4]	[219..9]
gi\|82737704, gi\|... - gi\|82737704\|ref\|ZP_00900550.1\| flagella basal body P-ring formation protein FlgA [Pseudomonas putida...	199.0	[0..5]	[219..36]
gi\|77968586, gi\|... - gi\|78067841\|ref\|YP_370610.1\| Flageller protein FlgA [Burkholderia sp. 383], gi\|77968586\|gb\|ABB09966....	199.0	[0..18]	[219..217]
gi\|72612523, gi\|... - gi\|74013921\|ref\|ZP_00684550.1\| Flageller protein FlgA [Burkholderia ambifaria AMMD], gi\|72612523\|gb\|...	196.0	[0..18]	[219..232]
gi\|24986118, gi\|... - gi\|26991083\|ref\|NP_746508.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas puti...	195.0	[0..5]	[219..11]
gi\|77975730, gi\|... - gi\|77975730\|ref\|ZP_00831264.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia f...	194.0	[0..5]	[219..9]
gi\|108812487, gi... - gi\|108812487\|ref\|YP_648254.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis... gi\|108807169, gi... - gi\|108807169\|ref\|YP_651085.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis... gi\|145598614, gi... - gi\|145598614\|ref\|YP_001162690.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pes...	194.0	[0..36]	[219..68]
gi\|166210809, gi... - gi\|166210809\|ref\|ZP_02236844.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|166010841, gi... - gi\|166010841\|ref\|ZP_02231739.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|166961938, gi... - gi\|167420243\|ref\|ZP_02311996.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|167049407, gi... - gi\|167401018\|ref\|ZP_02306521.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|162352268, gi... - gi\|77636012\|ref\|ZP_00798090.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia p... gi\|167469716 - gi\|167469716\|ref\|ZP_02334420.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis F... gi\|167425844, gi... - gi\|167425844\|ref\|ZP_02317597.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b... gi\|22126394, gi\|... - gi\|22126394\|ref\|NP_669817.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis ... gi\|45441413, gi\|... - gi\|45441413\|ref\|NP_992952.1\| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis ... gi\|89105476, gi\|... - gi\|89105476\|ref\|ZP_01177995.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia p... gi\|165926043, gi... - gi\|165926043\|ref\|ZP_02221875.1\| flagella basal body P-ring formation protein FlgA [Yersinia pestis b...	193.0	[0..36]	[219..71]
gi\|238799103, gi... - gi\|77960291\|ref\|ZP_00824170.1\| COG1261: Flagellar basal body P-ring biosynthesis protein [Yersinia m...	193.0	[0..2]	[219..17]
gi\|87305545, gi\|... - gi\|87305545\|ref\|ZP_01087699.1\| flagella basal body P-ring formation protein FlgA [Campylobacter jeju...	193.0	[0..1]	[220..1]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIIFLTFFI VINYIQAASL EEIKTALAKE FRNNFPKIII SQIDLKITSL PKDFDQYEFL  60
   61 RIANGRFNQA QGFLRAEFKT PQNI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QKNVFFRYFI QANLEVLKSE RAIKRGDKLG AFDYKSVLID FDKVPLNALT LDDVDNLVAK  60
   61 SNINKNAILR ANMFKTTALI RRNDPIIGVL SEANVDVLIE LVALQSANMG ERIRAKNKEG 120
  121 KVMQGIVVGK NRMIIQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.54
Match:	1wvoA
Description:	Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits