YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237613, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237613, gi|....

Description	E-value	Query Range	Subject Range
PAAD_METJA - Probable aromatic acid decarboxylase OS=Methanocaldococcus jannaschii GN=MJ0102 PE=3 SV=1 UBIX_METJA - Flavin prenyltransferase UbiX OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1...	231.0	[0..1]	[184..1]
gi\|56129127, gi\|... - gi\|56414870\|ref\|YP_151945.1\| hypothetical protein SPA2778 [Salmonella enterica subsp. enterica serov... gi\|197095275, gi... - gi\|197363798\|ref\|YP_002143435.1\| hypothetical protein SSPA2590 [Salmonella enterica subsp. enterica ...	230.0	[0..1]	[186..1]
gi\|56908645, gi\|... - gi\|56962407\|ref\|YP_174133.1\| aromatic acid decarboxylase [Bacillus clausii KSM-K16], gi\|56908645\|dbj...	225.0	[0..1]	[186..1]
gi\|213161739 - gi\|213161739\|ref\|ZP_03347449.1\| decarboxylase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|25299170, gi\|... - gi\|25299170\|pir\|\|AD0855 probable decarboxylase [imported] - Salmonella enterica subsp. enterica sero... gi\|214003230 - gi\|214003230\|ref\|ZP_03413965.1\| decarboxylase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|213857775 - gi\|213857775\|ref\|ZP_03384746.1\| decarboxylase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|29143177, gi\|... - gi\|29143177\|ref\|NP_806519.1\| decarboxylase [Salmonella enterica subsp. enterica serovar Typhi str. T... gi\|213648324 - gi\|213648324\|ref\|ZP_03378377.1\| decarboxylase [Salmonella enterica subsp. enterica serovar Typhi str... gi\|16761693 - gi\|16761693\|ref\|NP_457310.1\| decarboxylase [Salmonella enterica subsp. enterica serovar Typhi str. C... gi\|213425681 - gi\|213425681\|ref\|ZP_03358431.1\| decarboxylase [Salmonella enterica subsp. enterica serovar Typhi str...	224.0	[0..1]	[186..1]
gi\|13541292, gi\|... - gi\|14324675\|dbj\|BAB59602.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Thermoplasma volcanium GSS...	224.0	[0..1]	[186..1]
gi\|99036044 - gi\|99036044\|ref\|ZP_01315081.1\| hypothetical protein Wendoof_01000075 [Wolbachia endosymbiont of Dros...	224.0	[0..2]	[186..4]
gi\|149952125, gi... - gi\|77685710\|ref\|ZP_00801098.1\| Phenylacrylic acid decarboxylase [Alkaliphilus metalliredigenes QYMF]...	224.0	[0..1]	[184..1]
gi\|42410153, gi\|... - gi\|42520414\|ref\|NP_966329.1\| phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carbox...	224.0	[0..2]	[186..4]
gi\|58698712, gi\|... - gi\|58698712\|ref\|ZP_00373600.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Wolbachia endosymbiont ... gi\|225630180, gi... - gi\|225630180\|ref\|YP_002726971.1\| phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate ca... gi\|58696859, gi\|... - gi\|58696859\|ref\|ZP_00372377.1\| phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate carb... gi\|225590530, gi... - gi\|225677424\|ref\|ZP_03788390.1\| phenylacrylic acid decarboxylase, 3-octaprenyl-4-hydroxybenzoate car...	223.0	[0..2]	[186..4]
PADL_BACSU - Probable UbiX-like flavin prenyltransferase OS=Bacillus subtilis (strain 168) GN=bsdB PE=1 SV=1 gi\|221317435 - gi\|221317435\|ref\|ZP_03598729.1\| aromatic acid decarboxylase [Bacillus subtilis subsp. subtilis str. ... gi\|221312499 - gi\|221312499\|ref\|ZP_03594304.1\| aromatic acid decarboxylase [Bacillus subtilis subsp. subtilis str. ... gi\|221321697 - gi\|221321697\|ref\|ZP_03602991.1\| aromatic acid decarboxylase [Bacillus subtilis subsp. subtilis str. ... BSDB_BACSU, PAAD... - Probable aromatic acid decarboxylase OS=Bacillus subtilis GN=yclB PE=3 SV=1, Phenolic acid decarboxy...	223.0	[0..2]	[186..14]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVLLGISGS SSVNLGLKLL KNLENQCELY CILTQGAKLN FKTENQANLE EICQENFKYT  60
   61 HFLDDKNLSL SVASGSFGIE KTIIAPCSIS SLAKIHAGFA DTLLMRAAAV ALKERKKLIL 120
  121 GVREMPFSTL NLEHMLKLSQ MGVIIAPPII ASYSKANNLE QMENFIAGKW LDLLEIKHNL 180
  181 YEKWQNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.522879
Match:	1sbzA
Description:	Crystal Structure of dodecameric FMN-dependent Ubix-like Decarboxylase from Escherichia coli O157:H7
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity	5.88631349530005	bayes_pls_golite062009
carboxy-lyase activity	2.27469953971238	bayes_pls_golite062009
catalytic activity	1.88716391063227	bayes_pls_golite062009
carbon-carbon lyase activity	1.67751595868044	bayes_pls_golite062009
phosphopantothenoylcysteine decarboxylase activity	1.6488492075417	bayes_pls_golite062009
lyase activity	0.646446561158526	bayes_pls_golite062009
phosphopantothenate--cysteine ligase activity	0.35505046579356	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: