YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237753, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237753, gi|....

Description	E-value	Query Range	Subject Range
gi\|110683235, gi... - gi\|110802734\|ref\|YP_699473.1\| ribose-5-phosphate isomerase B [Clostridium perfringens SM101], gi\|110... gi\|18145863, gi\|... - gi\|18311180\|ref\|NP_563114.1\| ribose-5-phosphate isomerase B [Clostridium perfringens str. 13], gi\|18... gi\|110800386, gi... - gi\|110800386\|ref\|YP_696877.1\| ribose-5-phosphate isomerase B [Clostridium perfringens ATCC 13124], g... gi\|170711788, gi... - gi\|170711788\|gb\|EDT23970.1\| ribose 5-phosphate isomerase B [Clostridium perfringens B str. ATCC 3626... gi\|168213698, gi... - gi\|170714766\|gb\|EDT26948.1\| ribose 5-phosphate isomerase B [Clostridium perfringens CPE str. F4969],... gi\|168215827, gi... - gi\|182382193\|gb\|EDT79672.1\| ribose 5-phosphate isomerase B [Clostridium perfringens NCTC 8239], gi\|1...	229.0	[0..4]	[142..1]
gi\|25309787 - pir\|\|D97254 ribose 5-phosphate isomerase, RpiB [imported] - Clostridium acetobutylicum gi\|15896134, gi\|... - gi\|15896134\|ref\|NP_349483.1\| ribose-5-phosphate isomerase B [Clostridium acetobutylicum ATCC 824], g...	223.0	[0..4]	[143..1]
gi\|20806675 - gi\|20806675\|ref\|NP_621846.1\| Ribose 5-phosphate isomerase RpiB [Thermoanaerobacter tengcongensis MB4... gi\|20806675, gi\|... - gi\|20806675\|ref\|NP_621846.1\| ribose 5-phosphate isomerase RpiB [Thermoanaerobacter tengcongensis MB4...	220.0	[0..6]	[143..156]
gi\|83591208, gi\|... - gi\|83591208\|ref\|YP_431217.1\| ribose-5-phosphate isomerase [Moorella thermoacetica ATCC 39073], gi\|83...	219.0	[0..3]	[142..18]
gi\|78043323, gi\|... - gi\|78043323\|ref\|YP_361351.1\| ribose-5-phosphate isomerase B [Carboxydothermus hydrogenoformans Z-290...	219.0	[0..4]	[142..1]
gi\|222100463, gi... - gi\|222100463\|ref\|YP_002535031.1\| Ribose-5-phosphate isomerase [Thermotoga neapolitana DSM 4359], gi\|... gi\|3282092 - gi\|3282092\|emb\|CAA07515.1\| hypothetical protein [Thermotoga neapolitana]	217.0	[0..4]	[143..1]
gi\|67873844, gi\|... - gi\|67873844\|ref\|ZP_00503831.1\| Ribose/galactose isomerase [Clostridium thermocellum ATCC 27405], gi\|... gi\|196251796, gi... - gi\|196251796\|ref\|ZP_03150462.1\| sugar-phosphate isomerase, RpiB/LacA/LacB family [Clostridium thermo...	217.0	[0..4]	[143..1]
gi\|7446844 - pir\|\|H72296 sugar-phosphate isomerase - Thermotoga maritima (strain MSB8) gi\|170289515, gi... - gi\|170289515\|ref\|YP_001739753.1\| ribose 5-phosphate isomerase B [Thermotoga sp. RQ2], gi\|170177018\|g... gi\|15643838, gi\|... - gi\|4981625\|gb\|AAD36157.1\|AE001768_6 sugar-phosphate isomerase [Thermotoga maritima MSB8], gi\|1564383... gi\|214041655, gi... - gi\|254484533\|ref\|ZP_05097750.1\| ribose 5-phosphate isomerase B [Marinitoga piezophila KA3], gi\|22439... gi\|147736329, gi... - gi\|148270785\|ref\|YP_001245245.1\| ribose 5-phosphate isomerase B [Thermotoga petrophila RKU-1], gi\|14...	217.0	[0..4]	[143..1]
gi\|28202503, gi\|... - gi\|28210068\|ref\|NP_781012.1\| ribose-5-phosphate isomerase B [Clostridium tetani E88], gi\|28202503\|gb...	216.0	[0..4]	[142..1]
gi\|106895273, gi... - gi\|158321593\|ref\|YP_001514100.1\| RpiB/LacA/LacB family sugar-phosphate isomerase [Alkaliphilus oreml...	216.0	[0..4]	[142..1]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLREKIYIAS DHAGFELKEK ICVFLKEKNI IFNDLGTNTC ASCDYPDYAH LLAEKINKRS  60
   61 FGILICGSGI GISIAANRHK NIRCALCHES LSAELARRHN DANVLALGGR LIGVELAIDI 120
  121 IEKFIQTPFE EGRHMQRIQK IEVKI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.69897
Match:	1o1xA
Description:	Putative sugar-phosphate isomerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribose-5-phosphate isomerase activity	5.69997185547565	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	4.04314332668154	bayes_pls_golite062009
intramolecular oxidoreductase activity	3.57097659815257	bayes_pls_golite062009
isomerase activity	2.42530141345385	bayes_pls_golite062009
catalytic activity	2.21687627610124	bayes_pls_golite062009
allose 6-phosphate isomerase activity	2.20293230847792	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: