YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57237752, gi\|...
Organism:	Campylobacter jejuni RM1221
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57237752, gi|....

Description	E-value	Query Range	Subject Range
CHEB1_GEOMG - Chemotaxis response regulator protein-glutamate methylesterase 1 OS=Geobacter metallireducens (strai...	257.0	[0..2]	[182..169]
gi\|242140518, gi... - gi\|82533688\|ref\|ZP_00892746.1\| hypothetical protein Bpse110_02005003 [Burkholderia pseudomallei 1106... gi\|237814241, gi... - gi\|237814241\|ref\|YP_002898692.1\| chemotaxis response regulator protein-glutamate methylesterase [Bur... gi\|83617620 - gi\|83617620\|ref\|ZP_00928115.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive... gi\|225934913, gi... - gi\|226193313\|ref\|ZP_03788923.1\| protein-glutamate methylesterase CheB [Burkholderia pseudomallei Pak... gi\|126452993, gi... - gi\|82528071\|ref\|ZP_00887362.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive... gi\|254174717, gi... - gi\|254174717\|ref\|ZP_04881378.1\| protein-glutamate methylesterase CheB [Burkholderia mallei ATCC 1039... gi\|217424088, gi... - gi\|217424088\|ref\|ZP_03455588.1\| protein-glutamate methylesterase CheB [Burkholderia pseudomallei 576... gi\|167740663 - gi\|167740663\|ref\|ZP_02413437.1\| chemotaxis-specific methylesterase [Burkholderia pseudomallei 14] gi\|167896347 - gi\|167896347\|ref\|ZP_02483749.1\| chemotaxis-specific methylesterase [Burkholderia pseudomallei 7894] gi\|124383457, gi... - gi\|124383457\|ref\|YP_001027669.1\| chemotaxis-specific methylesterase [Burkholderia mallei NCTC 10229]... CHEB1_BURMA - Chemotaxis response regulator protein-glutamate methylesterase 1 OS=Burkholderia mallei (strain ATCC... CHEB1_BURMA - Chemotaxis response regulator protein-glutamate methylesterase 1 OS=Burkholderia mallei GN=cheB1 PE=... gi\|85066013 - gi\|85066013\|ref\|ZP_01026866.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive... gi\|194575939, gi... - gi\|87314844\|ref\|ZP_01095881.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive... gi\|84520043, gi\|... - gi\|84520043\|ref\|ZP_01007181.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive... gi\|67759142, gi\|... - gi\|67759142\|ref\|ZP_00497886.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive... gi\|167002960, gi... - gi\|243061448\|gb\|EES43634.1\| protein-glutamate methylesterase CheB [Burkholderia mallei PRL-20], gi\|1... CHEB1_BURP1 - Chemotaxis response regulator protein-glutamate methylesterase 1 OS=Burkholderia pseudomallei (strai... gi\|67635111, gi\|... - gi\|67635111\|ref\|ZP_00434072.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive... gi\|67639818, gi\|... - gi\|67639818\|ref\|ZP_00438651.1\| chemotaxis response regulator protein-glutamate methylesterase [Burkh... gi\|254206781, gi... - gi\|83622736\|ref\|ZP_00933035.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive... gi\|254298795, gi... - gi\|83676003\|ref\|ZP_00937807.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive... gi\|126440387, gi... - gi\|67738617\|ref\|ZP_00489258.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive... gi\|194512505, gi... - gi\|67752176\|ref\|ZP_00491182.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive... gi\|184214416, gi... - gi\|99908412\|ref\|ZP_01316116.1\| hypothetical protein Bpse1_03004572 [Burkholderia pseudomallei 1655],... gi\|90290290, gi\|... - gi\|90290290\|ref\|ZP_01209956.1\| hypothetical protein Bpse17_02005032 [Burkholderia pseudomallei 1710a...	256.0	[0..2]	[182..170]
gi\|161361074 - gi\|161361074\|ref\|ZP_02106932.1\| chemotaxis-specific methylesterase [Burkholderia pseudomallei 1106b] gi\|167920937 - gi\|167920937\|ref\|ZP_02508028.1\| chemotaxis-specific methylesterase [Burkholderia pseudomallei BCC215... gi\|161372009 - gi\|161372009\|ref\|ZP_02111572.1\| chemotaxis-specific methylesterase [Burkholderia pseudomallei 1710a] gi\|194523323, gi... - gi\|254201439\|ref\|ZP_04907803.1\| protein-glutamate methylesterase CheB [Burkholderia mallei FMH], gi\|... CHEB1_BURPS - Chemotaxis response regulator protein-glutamate methylesterase 1 OS=Burkholderia pseudomallei GN=che... CHEB1_BURPS - Chemotaxis response regulator protein-glutamate methylesterase 1 OS=Burkholderia pseudomallei (strai...	255.0	[0..2]	[182..173]
gi\|238713609, gi... - gi\|238785507\|ref\|ZP_04629490.1\| CheB [Yersinia bercovieri ATCC 43970], gi\|238713609\|gb\|EEQ05638.1\| C... gi\|77960283, gi\|... - gi\|77960283\|ref\|ZP_00824162.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive...	255.0	[0..2]	[181..157]
gi\|77957064 - gi\|77957064\|ref\|ZP_00821131.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive...	255.0	[0..2]	[181..143]
gi\|238788302, gi... - gi\|77975739\|ref\|ZP_00831273.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive...	255.0	[0..2]	[181..157]
CHEB1_BURTA - Chemotaxis response regulator protein-glutamate methylesterase 1 OS=Burkholderia thailandensis (stra... gi\|167620822 - gi\|167620822\|ref\|ZP_02389453.1\| chemotaxis-specific methylesterase [Burkholderia thailandensis Bt4]	255.0	[0..2]	[182..170]
gi\|238793987, gi... - gi\|77979949\|ref\|ZP_00835365.1\| COG2201: Chemotaxis response regulator containing a CheY-like receive...	254.0	[0..2]	[181..157]
CHEB_ERWCT - Chemotaxis response regulator protein-glutamate methylesterase OS=Erwinia carotovora subsp. atrosept... CHEB_PECAS - Chemotaxis response regulator protein-glutamate methylesterase OS=Pectobacterium atrosepticum (strai...	254.0	[0..2]	[181..158]
CHEB_SALPA - Chemotaxis response regulator protein-glutamate methylesterase OS=Salmonella paratyphi A (strain ATC... gi\|197262842, gi... - gi\|197262842\|ref\|ZP_03162916.1\| chemotaxis response regulator protein-glutamate methylesterase CheB ... gi\|197214906, gi... - gi\|197251203\|ref\|YP_002146104.1\| chemotaxis response regulator protein-glutamate methylesterase CheB... gi\|238912506 - gi\|238912506\|ref\|ZP_04656343.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. enter... gi\|194455783, gi... - gi\|194469419\|ref\|ZP_03075403.1\| chemotaxis response regulator protein-glutamate methylesterase CheB ... gi\|205342675, gi... - gi\|205342675\|gb\|EDZ29439.1\| chemotaxis response regulator protein-glutamate methylesterase CheB [Sal... gi\|213582760 - gi\|213582760\|ref\|ZP_03364586.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. enter... lcl\|NC_016856.1_... - [gene=cheB] [protein=chemotaxis-specific methylesterase] [protein_id=YP_005237885.1] [location=compl... gi\|213426382 - gi\|213426382\|ref\|ZP_03359132.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. enter... gi\|213163282 - gi\|213163282\|ref\|ZP_03348992.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. enter... gi\|197093566, gi... - gi\|197362089\|ref\|YP_002141726.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. ente... gi\|168259804, gi... - gi\|205350818\|gb\|EDZ37449.1\| chemotaxis response regulator protein-glutamate methylesterase CheB [Sal... gi\|168234017, gi... - gi\|205331961\|gb\|EDZ18725.1\| chemotaxis response regulator protein-glutamate methylesterase CheB [Sal... gi\|205327867, gi... - gi\|205327867\|gb\|EDZ14631.1\| chemotaxis response regulator protein-glutamate methylesterase CheB [Sal... gi\|167552443, gi... - gi\|205322874\|gb\|EDZ10713.1\| chemotaxis response regulator protein-glutamate methylesterase CheB [Sal... CHEB_SALTY - Chemotaxis response regulator protein-glutamate methylesterase OS=Salmonella typhimurium GN=cheB PE=... gi\|213976912 - gi\|213976912\|ref\|ZP_03404171.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. enter... gi\|213855166 - gi\|213855166\|ref\|ZP_03383406.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. enter... gi\|213647158 - gi\|213647158\|ref\|ZP_03377211.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. enter... gi\|213613010 - gi\|213613010\|ref\|ZP_03370836.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. enter... gi\|213999611 - gi\|213999611\|ref\|ZP_03410346.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. enter... CHEB_SALPA - Chemotaxis response regulator protein-glutamate methylesterase OS=Salmonella paratyphi A GN=cheB PE=... CHEB_SALTY - Chemotaxis response regulator protein-glutamate methylesterase OS=Salmonella typhimurium GN=cheB PE=... gi\|29137069, gi\|... - gi\|29141442\|ref\|NP_804784.1\| chemotaxis-specific methylesterase [Salmonella enterica subsp. enterica... CHEB_SALTY - Chemotaxis response regulator protein-glutamate methylesterase OS=Salmonella typhimurium (strain LT2...	253.0	[0..2]	[181..157]

Back

Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLILIGSST GGPNQLKFLL KDIDVKNTCV VIAQHMSASF IPSFVGQFNK EAFSEVCLLN  60
   61 DKEILSNKIY ICPKNTILSG NLNIVAAWQD VASSFKPSVD LLFHSAVSLA KTNKILAIIL 120
  121 TGMGDDGAKG LFELYKTGVR CLCENEADSV VYGMPKRAKD MNPHLKPMSL KEIKKEIVNF 180
  181 IDQD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.69897
Match:	1a2oA
Description:	Methylesterase CheB, N-terminal domain; Methylesterase CheB, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-glutamate methylesterase activity	4.76725156113043	bayes_pls_golite062009
protein methylesterase activity	4.76725156113043	bayes_pls_golite062009
carboxylesterase activity	2.33136193064185	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.880545826023013	bayes_pls_golite062009
hydrolase activity	0.834719366319261	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: