YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|126170843, gi...
Organism:	Pseudomonas aeruginosa C3719
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126170843, gi....

Description	E-value	Query Range	Subject Range
gi\|56554409, gi\|... - gi\|56554409\|pdb\|1X92\|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Phosphoheptose Isomerase...	1.0E-42	[1..197]	[3..199]
GMHA_PSEA7 - Phosphoheptose isomerase OS=Pseudomonas aeruginosa (strain PA7) GN=gmhA PE=3 SV=1	2.0E-42	[1..197]	[1..197]
GMHA_SHEAM - Phosphoheptose isomerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gmhA PE=3 SV=1	3.0E-41	[3..197]	[1..195]
SO0298 - phosphoheptose isomerase GMHA_SHESM - Phosphoheptose isomerase OS=Shewanella sp. (strain MR-4) GN=gmhA PE=3 SV=1 GMHA_SHESA - Phosphoheptose isomerase OS=Shewanella sp. (strain ANA-3) GN=gmhA PE=3 SV=1 GMHA_SHESR - Phosphoheptose isomerase OS=Shewanella sp. (strain MR-7) GN=gmhA PE=3 SV=1 GMHA_SHEON - Phosphoheptose isomerase OS=Shewanella oneidensis (strain MR-1) GN=gmhA PE=3 SV=1	4.0E-41	[3..197]	[1..195]
gi\|94425963, gi\|... - gi\|94501910\|ref\|ZP_01308420.1\| phosphoheptose isomerase [Oceanobacter sp. RED65], gi\|94425963\|gb\|EAT...	5.0E-41	[1..197]	[1..197]
GMHA_AZOVD - Phosphoheptose isomerase OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=gmhA PE=3 SV=1 gi\|67156158, gi\|... - gi\|67156158\|ref\|ZP_00417784.1\| Phosphoheptose isomerase [Azotobacter vinelandii AvOP], ref\|ZP_000901...	5.0E-41	[1..197]	[1..197]
GMHA_SHESW - Phosphoheptose isomerase OS=Shewanella sp. (strain W3-18-1) GN=gmhA PE=3 SV=1 GMHA_SHEPC - Phosphoheptose isomerase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gmhA PE=3 SV=1 gi\|124508423, gi... - gi\|124548491\|ref\|ZP_01707132.1\| phosphoheptose isomerase [Shewanella putrefaciens 200], gi\|124508423...	5.0E-41	[3..197]	[1..195]
GMHA_SHEB9 - Phosphoheptose isomerase OS=Shewanella baltica (strain OS195) GN=gmhA PE=3 SV=1 GMHA_SHEB8 - Phosphoheptose isomerase OS=Shewanella baltica (strain OS185) GN=gmhA PE=3 SV=1 GMHA_SHEB2 - Phosphoheptose isomerase OS=Shewanella baltica (strain OS223) GN=gmhA PE=3 SV=1 GMHA_SHEB5 - Phosphoheptose isomerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=gmhA PE=3 SV=1	6.0E-41	[3..197]	[1..195]
GMHA_BORA1 - Phosphoheptose isomerase OS=Bordetella avium (strain 197N) GN=gmhA PE=3 SV=1	7.0E-41	[1..197]	[1..197]
GMHA_WOLSU - Phosphoheptose isomerase OS=Wolinella succinogenes GN=gmhA PE=3 SV=1 GMHA_WOLSU - Phosphoheptose isomerase OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 1...	7.0E-41	[3..191]	[1..186]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDMQHRIRQL FQASIETKQQ ALEVLPPYIE QASLVMVNAL LNEGKILSCG NGGSAGDAQH  60
   61 FSSELLNRFE RERPSLPAVA LTTDSSTITS IANDYSYNEV FSKQIRALGQ PGDVLLAIST 120
  121 SGNSANVIQA IQAAHDREML VVALTGRDGG GMASLLLPED VEIRVPSKIT ARIQEVHLLA 180
  181 IHCLCDLIDR QLFGSEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.045757
Match:	1x92A
Description:	CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA PHOSPHOHEPTOSE ISOMERASE IN COMPLEX WITH REACTION PRODUCT D-GLYCERO-D-MANNOPYRANOSE-7-PHOSPHATE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
D-sedoheptulose 7-phosphate isomerase activity	4.14215058629352	bayes_pls_golite062009
catalytic activity	1.5278037255884	bayes_pls_golite062009
glucose-6-phosphate isomerase activity	1.27102475335512	bayes_pls_golite062009
glutamine-fructose-6-phosphate transaminase (isomerizing) activity	1.11549102314657	bayes_pls_golite062009
isomerase activity	0.875614547872629	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	0.718035369881213	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.543772038478781	bayes_pls_golite062009
binding	0.239170972934454	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: