YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|83680137, gi\|...
Organism:	Burkholderia pseudomallei 406e
Length:	157 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|83680137, gi|....

Description	E-value	Query Range	Subject Range
gi\|134248151, gi... - gi\|134280144\|ref\|ZP_01766855.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Burkholderi... gi\|67755814, gi\|... - gi\|67755814\|ref\|ZP_00494704.1\| COG0511: Biotin carboxyl carrier protein [Burkholderia pseudomallei P... gi\|169656859, gi... - gi\|67761800\|ref\|ZP_00500506.1\| COG0511: Biotin carboxyl carrier protein [Burkholderia pseudomallei S... gi\|226196846, gi... - gi\|226196846\|ref\|ZP_03792425.1\| acetyl-CoA carboxylase, biotin carboxyl carrier protein [Burkholderi... gi\|194505246, gi... - gi\|99912776\|ref\|ZP_01319474.1\| hypothetical protein Bpse1_03001040 [Burkholderia pseudomallei 1655],... gi\|67684734, gi\|... - gi\|90293344\|ref\|ZP_01212946.1\| hypothetical protein Bpse17_02001994 [Burkholderia pseudomallei 1710a... gi\|167895949 - gi\|167895949\|ref\|ZP_02483351.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Burk... gi\|167920547 - gi\|167920547\|ref\|ZP_02507638.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Burk... gi\|76579432, gi\|... - gi\|76809979\|ref\|YP_334871.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Burkhol... gi\|167740254 - gi\|167740254\|ref\|ZP_02413028.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Burk... gi\|167825878 - gi\|167825878\|ref\|ZP_02457349.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Burk... gi\|82531119, gi\|... - gi\|82531119\|ref\|ZP_00890341.1\| COG0511: Biotin carboxyl carrier protein [Burkholderia pseudomallei 1... gi\|161360611, gi... - gi\|90661841\|ref\|ZP_01249679.1\| hypothetical protein Bpse110_02006407 [Burkholderia pseudomallei 1106... gi\|52211005, gi\|... - gi\|53720591\|ref\|YP_109577.1\| acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Burkhol...	149.0	[0..1]	[157..1]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLRKLKTLI DLVSESGISE LEVTEGEGKV RIVKNAPPVY VQPSAGFAPQ VSAPAPVVTA  60
   61 PSEAASAAAA AAAAAAAAPQ GHVVTSPMVG TFYRAPSPGA DPFVQVGDTV KEGQTLCIIE 120
  121 AMKLLNEIES DKAGVIKEIL AENGQAVEYG QPLFVIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.045757
Match:	1a6xA
Description:	STRUCTURE OF THE APO-BIOTIN CARBOXYL CARRIER PROTEIN (APO-BCCP87) OF ESCHERICHIA COLI ACETYL-COA CARBOXYLASE, NMR, 49 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
acetyl-CoA carboxylase activity	10.7856398099075	bayes_pls_golite062009
CoA carboxylase activity	10.0090741810507	bayes_pls_golite062009
ligase activity, forming carbon-carbon bonds	9.84466409837462	bayes_pls_golite062009
ligase activity	5.03219018024593	bayes_pls_golite062009
catalytic activity	1.39099902011318	bayes_pls_golite062009
dihydrolipoyllysine-residue acetyltransferase activity	0.77123283777817	bayes_pls_golite062009
S-acetyltransferase activity	0.62484336481352	bayes_pls_golite062009
dihydrolipoamide S-acyltransferase activity	0.61155119443764	bayes_pls_golite062009
S-acyltransferase activity	0.14278235106683	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: