YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|57904708
Organism:	Cloning vector MuNXKan
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|57904708.

Description	E-value	Query Range	Subject Range
gi\|188488633, gi... - gi\|75513103\|ref\|ZP_00735565.1\| COG5566: Uncharacterized conserved protein [Escherichia coli 53638], ...	165.0	[0..1]	[129..1]
gi\|75208635, gi\|... - gi\|75208635\|ref\|ZP_00708939.1\| COG5566: Uncharacterized conserved protein [Escherichia coli B171], g...	164.0	[0..1]	[129..1]
gi\|36786769, gi\|... - gi\|37527335\|ref\|NP_930679.1\| hypothetical protein plu3461 [Photorhabdus luminescens subsp. laumondii...	141.0	[0..18]	[129..1]
gi\|86164694, gi\|... - gi\|87119992\|ref\|ZP_01075888.1\| prophage MuSo2, positive regulator of late transcription, putative [M...	141.0	[0..2]	[129..11]
gi\|29137478, gi\|... - gi\|29141850\|ref\|NP_805192.1\| putative bacteriophage transcriptional regulator [Salmonella enterica s... gi\|16760386 - gi\|16760386\|ref\|NP_456003.1\| putative bacteriophage transcriptional regulator [Salmonella enterica s... gi\|213612809 - gi\|213612809\|ref\|ZP_03370635.1\| putative bacteriophage transcriptional regulator [Salmonella enteric... gi\|213579687 - gi\|213579687\|ref\|ZP_03361513.1\| putative bacteriophage transcriptional regulator [Salmonella enteric... gi\|213426796 - gi\|213426796\|ref\|ZP_03359546.1\| putative bacteriophage transcriptional regulator [Salmonella enteric... gi\|213052036 - gi\|213052036\|ref\|ZP_03344914.1\| putative bacteriophage transcriptional regulator [Salmonella enteric... gi\|218700273, gi... - gi\|218700273\|ref\|YP_002407902.1\| Putative DNA-binding protein from phage origin [Escherichia coli IA... gi\|213999399 - gi\|213999399\|ref\|ZP_03410134.1\| putative bacteriophage transcriptional regulator [Salmonella enteric... gi\|213854558 - gi\|213854558\|ref\|ZP_03382798.1\| putative bacteriophage transcriptional regulator [Salmonella enteric... gi\|213647033 - gi\|213647033\|ref\|ZP_03377086.1\| putative bacteriophage transcriptional regulator [Salmonella enteric... gi\|16502681, gi\|... - gi\|25302033\|pir\|\|AD0683 probable bacteriophage transcription regulator STY1591 [imported] - Salmonel...	140.0	[0..18]	[129..1]
gi\|193066151, gi... - gi\|75255718\|ref\|ZP_00727479.1\| COG5566: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|227886031, gi... - gi\|227886031\|ref\|ZP_04003836.1\| phage transcriptional regulator [Escherichia coli 83972], gi\|2278369...	140.0	[0..18]	[129..1]
gi\|75228542, gi\|... - gi\|75228542\|ref\|ZP_00715176.1\| COG5566: Uncharacterized conserved protein [Escherichia coli B7A], gi...	140.0	[0..18]	[129..1]
gi\|85058794, gi\|... - gi\|85058794\|ref\|YP_454496.1\| putative phage transcriptional regulator [Sodalis glossinidius str. 'mo...	140.0	[0..18]	[129..1]
SO2668 - prophage MuSo2 positive regulator of late transcription, putative gi\|24374209, gi\|... - gi\|24374209\|ref\|NP_718252.1\| prophage MuSo2, positive regulator of late transcription, putative [She...	140.0	[0..2]	[129..18]
gi\|50122616, gi\|... - gi\|50122616\|ref\|YP_051783.1\| phage regulatory protein protein [Pectobacterium atrosepticum SCRI1043]...	139.0	[0..18]	[129..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEDLFGDLQ DDTILAHLDN PAEDTSRFPA LLAELNDLLR GELSRLGVDP AHSLEIVVAI  60
   61 CKHLGGGQVY IPRGQALDSL IRDLRIWNDF NGRNVSELTT RYGVTFNTVY KAIRRMRRLK 120
  121 YRQYQPSLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	1rr7A
Description:	Crystal structure of the Middle Operon Regulator protein of Bacteriophage Mu
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.334577365229545	bayes_pls_golite062009
transcription regulator activity	0.0696342306231097	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: