YRC Public Data Repository - Protein Structure Prediction

Protein:	GMHA_SHESA
Organism:	Shewanella sp. ANA-3
Length:	197 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GMHA_SHESA.

Description	E-value	Query Range	Subject Range
GMHA_SHESW - Phosphoheptose isomerase OS=Shewanella sp. (strain W3-18-1) GN=gmhA PE=3 SV=1 GMHA_SHEPC - Phosphoheptose isomerase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=gmhA PE=3 SV=1 gi\|124508423, gi... - gi\|124548491\|ref\|ZP_01707132.1\| phosphoheptose isomerase [Shewanella putrefaciens 200], gi\|124508423...	168.0	[0..1]	[197..1]
GMHA_SHEB9 - Phosphoheptose isomerase OS=Shewanella baltica (strain OS195) GN=gmhA PE=3 SV=1 GMHA_SHEB8 - Phosphoheptose isomerase OS=Shewanella baltica (strain OS185) GN=gmhA PE=3 SV=1 GMHA_SHEB2 - Phosphoheptose isomerase OS=Shewanella baltica (strain OS223) GN=gmhA PE=3 SV=1 GMHA_SHEB5 - Phosphoheptose isomerase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=gmhA PE=3 SV=1	168.0	[0..1]	[197..1]
GMHA_SHELP - Phosphoheptose isomerase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gmhA PE=3 SV=1	167.0	[0..1]	[196..1]
GMHA_SHEAM - Phosphoheptose isomerase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=gmhA PE=3 SV=1	167.0	[0..1]	[195..1]
GMHA_SHEFN - Phosphoheptose isomerase OS=Shewanella frigidimarina (strain NCIMB 400) GN=gmhA PE=3 SV=1	167.0	[0..1]	[196..1]
GMHA_WOLSU - Phosphoheptose isomerase OS=Wolinella succinogenes GN=gmhA PE=3 SV=1 GMHA_WOLSU - Phosphoheptose isomerase OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 / LMG 7466 / NCTC 1...	167.0	[0..1]	[189..1]
GMHA_HELPJ - Phosphoheptose isomerase OS=Helicobacter pylori (strain J99 / ATCC 700824) GN=gmhA PE=3 SV=1 gi\|7437308 - pir\|\|B71887 phosphoheptose isomerase - Helicobacter pylori (strain J99)	165.0	[0..1]	[194..1]
GMHA_SHEDO - Phosphoheptose isomerase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=g...	165.0	[0..1]	[195..1]
gi\|112805305, gi... - gi\|153951000\|ref\|YP_001397748.1\| phosphoheptose isomerase [Campylobacter jejuni subsp. doylei 269.97...	164.0	[0..1]	[188..1]
gi\|86152528, gi\|... - gi\|86152528\|ref\|ZP_01070733.1\| phosphoheptose isomerase [Campylobacter jejuni subsp. jejuni HB93-13]... gi\|41058387 - gi\|41058387\|gb\|AAR99164.1\| putative phosphoheptose isomerase1 [Campylobacter jejuni]	163.0	[0..1]	[188..1]

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Predicted Domain #1

Region A:
Residues: [1-197]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLERIKDSFT ESIQTKIDAA EALPESIAKA AEMMVQCLLG GNKILACGNG GSAGDAQHFS  60
   61 AELLNRYEIE RPPLPAIALS TDTSTITAIA NDYSYDEIFS KQILALGQPG DILLAISTSG 120
  121 NSGNVIKAME AALSRDMTIV ALTGKDGGAM AGLLSVGDVE IRVPSNVTAR IQEVHLLVIH 180
  181 CLCDNIDRTL FPQDEQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	1x92A
Description:	CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA PHOSPHOHEPTOSE ISOMERASE IN COMPLEX WITH REACTION PRODUCT D-GLYCERO-D-MANNOPYRANOSE-7-PHOSPHATE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
D-sedoheptulose 7-phosphate isomerase activity	4.14215058629352	bayes_pls_golite062009
catalytic activity	1.5278037255884	bayes_pls_golite062009
glucose-6-phosphate isomerase activity	1.27102475335512	bayes_pls_golite062009
glutamine-fructose-6-phosphate transaminase (isomerizing) activity	1.11549102314657	bayes_pls_golite062009
isomerase activity	0.875614547872629	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	0.718035369881213	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.543772038478781	bayes_pls_golite062009
binding	0.239170972934454	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: