YRC Public Data Repository - Protein Structure Prediction

Protein:	UPP_GEOKA
Organism:	Geobacillus kaustophilus HTA426
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UPP_GEOKA.

Description	E-value	Query Range	Subject Range
UPP_STRA3 - Uracil phosphoribosyltransferase OS=Streptococcus agalactiae serotype III (strain NEM316) GN=upp PE=... UPP_STRA5 - Uracil phosphoribosyltransferase OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 ... UPP_STRA1 - Uracil phosphoribosyltransferase OS=Streptococcus agalactiae serotype Ia GN=upp PE=3 SV=1 UPP_STRA5 - Uracil phosphoribosyltransferase OS=Streptococcus agalactiae serotype V GN=upp PE=3 SV=1 UPP_STRA1 - Uracil phosphoribosyltransferase OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 /... gi\|77414902, gi\|... - gi\|77414902\|ref\|ZP_00791007.1\| uracil phosphoribosyltransferase [Streptococcus agalactiae 515], gi\|7... gi\|77409460, gi\|... - gi\|77409460\|ref\|ZP_00786153.1\| uracil phosphoribosyltransferase [Streptococcus agalactiae COH1], gi\|... gi\|77174294, gi\|... - gi\|77407099\|ref\|ZP_00784099.1\| uracil phosphoribosyltransferase [Streptococcus agalactiae H36B], gi\|... UPP_STRA3 - Uracil phosphoribosyltransferase OS=Streptococcus agalactiae serotype III GN=upp PE=3 SV=1	252.0	[0..1]	[209..1]
gi\|89210214, gi\|... - gi\|89210214\|ref\|ZP_01188606.1\| Uracil phosphoribosyl transferase [Halothermothrix orenii H 168], gi\|...	252.0	[0..1]	[209..1]
gi\|111619398, gi... - gi\|111619398\|ref\|ZP_01406409.1\| uracil phosphoribosyltransferase [Acidovorax avenae subsp. citrulli ...	251.0	[0..2]	[209..28]
UPP_BACHD - Uracil phosphoribosyltransferase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344... UPP_BACHD - Uracil phosphoribosyltransferase OS=Bacillus halodurans GN=upp PE=3 SV=1	250.0	[0..1]	[209..1]
UPP_STRSL - Uracil phosphoribosyltransferase OS=Streptococcus salivarius GN=upp PE=3 SV=1 gi\|228476631, gi... - gi\|228476631\|ref\|ZP_04061313.1\| uracil phosphoribosyltransferase [Streptococcus salivarius SK126], g...	250.0	[0..1]	[209..1]
UPP_PEDPA - Uracil phosphoribosyltransferase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=upp PE=3...	250.0	[0..1]	[209..1]
UPP_LISIN - Uracil phosphoribosyltransferase OS=Listeria innocua GN=upp PE=3 SV=1 UPP_LISIN - Uracil phosphoribosyltransferase OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=upp PE=3 SV=1	249.0	[0..1]	[209..1]
gi\|89089364, gi\|... - gi\|89095618\|ref\|ZP_01168512.1\| uracil phosphoribosyltransferase [Bacillus sp. NRRL B-14911], gi\|8908...	249.0	[0..1]	[209..1]
UPP_ACISJ - Uracil phosphoribosyltransferase OS=Acidovorax sp. (strain JS42) GN=upp PE=3 SV=1	248.0	[0..1]	[209..1]
gi\|223933329, gi... - gi\|81097024\|ref\|ZP_00875340.1\| Uracil phosphoribosyl transferase [Streptococcus suis 89/1591], gi\|80...	248.0	[0..1]	[209..1]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKVYVFDHP LIQHKLTYIR DKNTGTKEFR ELVDEVATLM AFEITRDLPL EEVEIETPVS  60
   61 KARAKVIAGK KLGVIPILRA GIGMVDGILK LIPAAKVGHI GLYRDPQTLK PVEYYVKLPS 120
  121 DVEERDFIIV DPMLATGGSA VAAIDALKKR GAKSIKFMCL IAAPEGVKAV ETAHPDVDIY 180
  181 IAALDERLND HGYIVPGLGD AGDRLFGTK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	66.39794
Match:	1i5eA
Description:	Uracil PRTase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
uracil phosphoribosyltransferase activity	3.97944228585882	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.91023158228049	bayes_pls_golite062009
adenine phosphoribosyltransferase activity	3.07502596276449	bayes_pls_golite062009
transferase activity	2.73727660668741	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	2.67945744445872	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.53679639481311	bayes_pls_golite062009
catalytic activity	2.30431811394775	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	0.947697983706416	bayes_pls_golite062009
diphosphotransferase activity	0.749909396904601	bayes_pls_golite062009
binding	0.730385736169604	bayes_pls_golite062009
nucleic acid binding	0.552133387792911	bayes_pls_golite062009
DNA binding	0.439741935655503	bayes_pls_golite062009
transcription regulator activity	0.396538943915776	bayes_pls_golite062009
amidophosphoribosyltransferase activity	0.360901350940423	bayes_pls_golite062009
purine binding	0.358545436706029	bayes_pls_golite062009
orotate phosphoribosyltransferase activity	0.148898393751978	bayes_pls_golite062009
nucleobase binding	0.0803493215714011	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: