YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194536660, gi...
Organism:	Vibrio cholerae RC385
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194536660, gi....

Description	E-value	Query Range	Subject Range
MGSA_VIBPA - Methylglyoxal synthase OS=Vibrio parahaemolyticus GN=mgsA PE=3 SV=1 MGSA_VIBPA - Methylglyoxal synthase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=mgsA PE=3 ... gi\|153838728, gi... - gi\|153838728\|ref\|ZP_01991395.1\| methylglyoxal synthase [Vibrio parahaemolyticus AQ3810], gi\|14974785...	267.0	[0..1]	[150..1]
MGSA_VIBVU - Methylglyoxal synthase OS=Vibrio vulnificus GN=mgsA PE=3 SV=1 MGSA_VIBVY - Methylglyoxal synthase OS=Vibrio vulnificus (strain YJ016) GN=mgsA PE=3 SV=1 MGSA_VIBVU - Methylglyoxal synthase OS=Vibrio vulnificus (strain CMCP6) GN=mgsA PE=3 SV=1	266.0	[0..1]	[151..1]
gi\|85833488, gi\|... - gi\|86148719\|ref\|ZP_01066995.1\| methylglyoxal synthase [Vibrio sp. MED222], gi\|85833488\|gb\|EAQ51670.1... MGSA_VIBTL - Methylglyoxal synthase OS=Vibrio tasmaniensis (strain LGP32) GN=mgsA PE=3 SV=1	264.0	[0..1]	[151..1]
gi\|90413297, gi\|... - gi\|90413297\|ref\|ZP_01221291.1\| methylglyoxal synthase [Photobacterium profundum 3TCK], gi\|90325698\|g...	263.0	[0..1]	[150..1]
gi\|194539096, gi... - gi\|75855948\|ref\|ZP_00763586.1\| COG1803: Methylglyoxal synthase [Vibrio sp. Ex25], gi\|254229815\|ref\|Z... gi\|91188321, gi\|... - gi\|91227912\|ref\|ZP_01262051.1\| methylglyoxal synthase [Vibrio alginolyticus 12G01], gi\|91188321\|gb\|E...	263.0	[0..1]	[150..1]
gi\|84390465, gi\|... - gi\|84390465\|ref\|ZP_00991476.1\| methylglyoxal synthase [Vibrio splendidus 12B01], gi\|84376725\|gb\|EAP9...	263.0	[0..1]	[151..1]
gi\|90439871, gi\|... - gi\|90579038\|ref\|ZP_01234848.1\| methylglyoxal synthase [Vibrio angustum S14], gi\|90439871\|gb\|EAS65052...	262.0	[0..1]	[150..1]
MGSA_PHOPR - Methylglyoxal synthase OS=Photobacterium profundum GN=mgsA PE=3 SV=2 MGSA_PHOPR - Methylglyoxal synthase OS=Photobacterium profundum (strain SS9) GN=mgsA PE=3 SV=2	261.0	[0..1]	[150..1]
gi\|77974894 - gi\|77974894\|ref\|ZP_00830432.1\| COG1803: Methylglyoxal synthase [Yersinia frederiksenii ATCC 33641]	261.0	[0..1]	[150..27]
gi\|89049676, gi\|... - gi\|89074572\|ref\|ZP_01161044.1\| methylglyoxal synthase [Photobacterium sp. SKA34], gi\|89049676\|gb\|EAR...	261.0	[0..1]	[150..1]

Back

Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKTTRTMAA HKHVALVAHD NCKGELLRWV TENKEKLQRH FLYATGTTGH MLSKETGLAI  60
   61 KSMISGPMGG DQQLGALISE GKIDVLIFFW DPLNAVPHDP DVKALLRIAS VWNIPVATNR 120
  121 ASAKFLFSSS LMEQEVQIEI PDYQAYLAER T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.0
Match:	1b93A
Description:	Methylglyoxal synthase, MgsA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylglyoxal synthase activity	7.67158041469211	bayes_pls_golite062009
catalytic activity	2.05174935916901	bayes_pls_golite062009
carbon-oxygen lyase activity	0.8193600732138	bayes_pls_golite062009
carbon-oxygen lyase activity, acting on phosphates	0.74427062677768	bayes_pls_golite062009
lyase activity	0.129701662862796	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: