YRC Public Data Repository - Protein Structure Prediction

Protein:	SEN15_ASHGO
Organism:	Ashbya gossypii ATCC 10895
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEN15_ASHGO.

Description	E-value	Query Range	Subject Range
gi\|49645389 - gi\|49645389\|emb\|CAG98961.1\| KLLA0F26334p [Kluyveromyces lactis] gi\|50312439, gi\|... - gi\|50312439\|ref\|XP_456253.1\| unnamed protein product [Kluyveromyces lactis], gi\|49645389\|emb\|CAG9896...	156.0	[0..10]	[118..6]
SEN15_NEUCR, SE1... - Probable tRNA-splicing endonuclease subunit sen-15 OS=Neurospora crassa GN=sen-15 PE=3 SV=1, (Q7RY78... SEN15_NEUCR - Probable tRNA-splicing endonuclease subunit tsp-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-...	148.0	[0..2]	[118..68]
gi\|116207406, gi... - gi\|88183593\|gb\|EAQ91061.1\| hypothetical protein CHGG_02996 [Chaetomium globosum CBS 148.51], gi\|1162...	143.0	[0..3]	[118..1]
gi\|49649191 - gi\|49649191\|emb\|CAG81529.1\| YALI0D26576p [Yarrowia lipolytica] gi\|49649191, gi\|... - gi\|50551697\|ref\|XP_503323.1\| YALI0D26576p [Yarrowia lipolytica], gi\|49649191\|emb\|CAG81529.1\| unnamed...	139.0	[0..12]	[118..1]
gi\|49525554, gi\|... - gi\|50287635\|ref\|XP_446247.1\| unnamed protein product [Candida glabrata], gi\|49525554\|emb\|CAG59171.1\|... gi\|49525554 - gi\|49525554\|emb\|CAG59171.1\| unnamed protein product [Candida glabrata]	137.0	[0..9]	[118..1]
SEN15 - Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p gi\|151946217 - gi\|151946217\|gb\|EDN64448.1\| tRNA splicing endonuclease subunit [Saccharomyces cerevisiae YJM789]	135.0	[0..10]	[118..24]
gi\|49657756, gi\|... - gi\|50426967\|ref\|XP_462086.1\| hypothetical protein DEHA0G13497g [Debaryomyces hansenii CBS767], gi\|49...	134.0	[0..11]	[118..2]
gi\|109019244 - gi\|109019244\|ref\|XP_001109012.1\| PREDICTED: similar to tRNA-splicing endonuclease subunit Sen15 (tRN...	130.0	[0..12]	[118..107]
gi\|73961158 - gi\|73961158\|ref\|XP_853269.1\| PREDICTED: similar to tRNA-splicing endonuclease subunit Sen15 (tRNA-in...	129.0	[0..12]	[115..59]

Back

Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSYNGGLT GLTALVRNNL VHYQQWSDVE VVPLRDREAL RGRPAQKLSN DDEEIGVEYV  60
   61 LPVELSQYRS SGVTLEALDK VFSQLPASCK RVVLAISSDD GTVVYYTVYQ GLQRPRKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	2gw6A
Description:	No description for 2gw6A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits