| Protein: | ptr-12 |
| Organism: | Caenorhabditis elegans |
| Length: | 350 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ptr-12.
| Description | E-value | Query Range |
Subject Range |
|
|
288.0 | [0..11] | [342..172] |
|
Region A: Residues: [1-350] |
1 11 21 31 41 51
| | | | | |
1 MDDLRVKYVI PNFYLANVFV RKPGDLTDGA RLQRLNQFVE EMEHLNGSWG SLGTNYFVRD 60
61 FVNFQAAMVE EEEAEGGEEE ASIVKRGGID VNNLPMFLEW PEYLFWKGFV QFHSAENRTV 120
121 LDRFFITFAI HGTNLQSWPA RGDALREWRN VVDKYSAEFG LSVFSDDGIY VDLIENMPTD 180
181 AWQSAVATLA CMAFICFVFM YDVPTVMVAT SIIASIMTGI LGILSLTGTD LDPIVMSALI 240
241 ISIGFSVDIP AHISYHYHTS PSDNGIRHRL HKTLSSVGFP ALQATVSTSL CVLSLKFSSI 300
301 YMSCAFVKTM ITCMILCVFH ALVLLPCLFA IFHRIHSLFR VPKTSPIESK
|
| Detection Method: |  |
| Confidence: | 72.522879 |
| Match: | 1oy6A |
| Description: | Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains; Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains; Multidrug efflux transporter AcrB transmembrane domain |
Matching Structure (courtesy of the PDB): |
|
