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View Structure Prediction Details

Protein: CE39603
Organism: Caenorhabditis elegans
Length: 306 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39603.

Description E-value Query
Range
Subject
Range
gi|238785693, gi... - gi|77956875|ref|ZP_00820950.1| COG1230: Co/Zn/Cd efflux system component [Yersinia bercovieri ATCC 4...
232.0 [0..21] [304..10]

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Predicted Domain #1
Region A:
Residues: [1-306]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTLTEEESD KAAEKEKRDL VWDSRITTLT IILNVSLIIA KSIVAYFSGS LAILASVVDS  60
   61 FMDITSGVVV WYACYKIEKM NKEQYPVGMR KLEPLTVVIV GMIMLFANFI VLERATVQTI 120
  121 EDKLDPRVDL TTLIVLCTGT ATKFCLFMIC RVRKSAACLV LAIDQRNDCL TNIVALLGAW 180
  181 IGQNWWKYAD PLGAFMVSGF IIVTWFLTIR EHIPYLIGRR ADQEFINRIT NISINHDQRI 240
  241 KALDTVHVYH FGEKFLVEVH AVFDEPAPLQ MAHDVAESLQ VKLEKLPFVE RAFVHCDYKF 300
  301 DGDEHV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.69897
Match: 2qfiA
Description: No description for 2qfiA was found.

Predicted functions:

Term Confidence Notes
cation transmembrane transporter activity 4.5307404935943 bayes_pls_golite062009
ion transmembrane transporter activity 4.4634224995221 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 4.1916987544196 bayes_pls_golite062009
transporter activity 2.72282838578572 bayes_pls_golite062009
transmembrane transporter activity 2.61155472577391 bayes_pls_golite062009
substrate-specific transporter activity 2.37288341875523 bayes_pls_golite062009
efflux transmembrane transporter activity 1.43383523050563 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 0.253156897715141 bayes_pls_golite062009
binding 0.112542057149574 bayes_pls_golite062009
metal ion transmembrane transporter activity 0.0523266677042269 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle