YRC Public Data Repository - Protein Structure Prediction

Protein:	RL27_CANLF
Organism:	Canis lupus familiaris
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL27_CANLF.

Description	E-value	Query Range	Subject Range
gi\|60653339 - gi\|60653339\|gb\|AAX29364.1\| ribosomal protein L27 [synthetic construct]	230.0	[0..1]	[136..1]
RL27_BOVIN - 60S ribosomal protein L27 OS=Bos taurus GN=RPL27 PE=2 SV=2 RL27_CHICK - 60S ribosomal protein L27 OS=Gallus gallus GN=RPL27 PE=2 SV=2 gi\|114667090, gi... - gi\|55645473\|ref\|XP_511528.1\| PREDICTED: hypothetical protein isoform 6 [Pan troglodytes], gi\|1146670... RL27_MACFA - 60S ribosomal protein L27 OS=Macaca fascicularis GN=RPL27 PE=2 SV=1 RL27_PIG - 60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=1 SV=1 gi\|197129865, gi... - gi\|197129865\|gb\|ACH46363.1\| putative ribosomal protein L27 variant 1 [Taeniopygia guttata], gi\|19712... CCDS11449.1_1 - null gi\|542173856\|ref... - PREDICTED: 60S ribosomal protein L27 [Zonotrichia albicollis] gi\|123998207, gi... - gi\|60656393\|gb\|AAX32760.1\| ribosomal protein L27 [synthetic construct], gi\|123998207\|gb\|ABM86705.1\| ... ENSCJAT00000025389 - null gi\|109115555, gi... - gi\|109115555\|ref\|XP_001112717.1\| PREDICTED: similar to ribosomal protein L27 isoform 1 [Macaca mulat... gi\|149723745 - gi\|149723745\|ref\|XP_001492525.1\| PREDICTED: similar to ribosomal protein L27 [Equus caballus] ENSOCUP000000217... - pep:novel chromosome:oryCun2:12:4376635:4377045:1 gene:ENSOCUG00000024462 transcript:ENSOCUT00000027... RL27_RAT - 60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2 RPL27 - ribosomal protein L27 RL27_MOUSE - 60S ribosomal protein L27 OS=Mus musculus GN=Rpl27 PE=1 SV=2 RL27_CERNI - 60S ribosomal protein L27 OS=Cervus nippon GN=RPL27 PE=2 SV=2	229.0	[0..1]	[136..1]
gi\|445615 - gi\|445615\|prf\|\|1909362A ribosomal protein L27	228.0	[0..1]	[136..1]
gi\|82907223, gi\|... - gi\|94382507\|ref\|XP_995001.1\| PREDICTED: similar to ribosomal protein L27 [Mus musculus], gi\|82907223...	226.0	[0..1]	[136..1]
gi\|148235638, gi... - gi\|34193964\|gb\|AAH56506.1\| Rpl27-prov protein [Xenopus laevis], gi\|148235638\|ref\|NP_001080423.1\| rib... gi\|62859151, gi\|... - gi\|89268262\|emb\|CAJ82533.1\| ribosomal protein L27 [Xenopus tropicalis], gi\|62859151\|ref\|NP_001016180...	226.0	[0..1]	[136..1]
RL27_HIPCM - 60S ribosomal protein L27 OS=Hippocampus comes GN=rpl27 PE=2 SV=2	226.0	[0..1]	[136..1]
gi\|109512048, gi... - gi\|109512048\|ref\|XP_001068936.1\| PREDICTED: similar to ribosomal protein L27 [Rattus norvegicus], gi...	225.0	[0..1]	[136..1]
RL27_DANRE - 60S ribosomal protein L27 OS=Danio rerio GN=rpl27 PE=2 SV=3	225.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKFMKPGKV VLVLAGRYSG RKAVIVKNID DGTSDRPYSH ALVAGIDRYP RKVTAAMGKK  60
   61 KIAKRSKIKS FVKVYNYNHL MPTRYSVDIP LDKTVVNKDV FRDPALKRKA RREAKVKFEE 120
  121 KYKTGKNKWF FQKLRF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.08
Match:	2joyA
Description:	No description for 2joyA was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.33175622373475	bayes_pls_golite062009
structural molecule activity	8.78104488316498	bayes_pls_golite062009
translation elongation factor activity	2.67300686401704	bayes_pls_golite062009
binding	1.53082494948413	bayes_pls_golite062009
RNA binding	1.34286989242843	bayes_pls_golite062009
nucleic acid binding	1.34250569976274	bayes_pls_golite062009
transcription regulator activity	1.24801565562229	bayes_pls_golite062009
DNA binding	0.817602006068725	bayes_pls_golite062009
protein binding	0.247509245072821	bayes_pls_golite062009
transcription factor activity	0.151888933180377	bayes_pls_golite062009
translation regulator activity	0.084754562593104	bayes_pls_golite062009
translation factor activity, nucleic acid binding	0.0564075582229911	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: