YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|58177185
Organism:	Homo sapiens
Length:	86 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|58177185.

Description	E-value	Query Range	Subject Range
gi\|113206068, gi... - gi\|113206068\|ref\|NP_001038106.1\| par-6 partitioning defective 6 homolog beta [Gallus gallus], gi\|110...	160.0	[0..3]	[86..13]
PARD6B - par-6 partitioning defective 6 homolog beta (C. elegans)	159.0	[0..4]	[86..14]
gi\|157820359, gi... - ref\|XP_342590.1\| similar to PAR6B [Rattus norvegicus], gi\|157820359\|ref\|NP_001102079.1\| par-6 (parti...	159.0	[0..4]	[86..14]
gi\|73992585 - gi\|73992585\|ref\|XP_543050.2\| PREDICTED: similar to Partitioning defective-6 homolog beta (PAR-6 beta...	159.0	[0..4]	[86..208]
gi\|76633889 - gi\|76633889\|ref\|XP_588744.2\| PREDICTED: similar to Partitioning defective-6 homolog beta (PAR-6 beta...	157.0	[0..1]	[86..2]
gi\|19264039 - gi\|19264039\|gb\|AAH25147.1\| Pard6b protein [Mus musculus]	157.0	[0..4]	[86..14]
gi\|114673736 - gi\|114673736\|ref\|XP_001145392.1\| PREDICTED: PAR-6 gamma protein [Pan troglodytes]	156.0	[0..5]	[86..17]
gi\|109122575 - gi\|109122575\|ref\|XP_001090088.1\| PREDICTED: similar to PAR-6 gamma protein [Macaca mulatta]	155.0	[0..5]	[86..17]

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Predicted Domain #1

Region A:
Residues: [1-86]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPHMSIVEVK SKFDAEFRRF ALPRASVSGF QEFSRLLRAV HQIPGLDVLL GYTDAHGDLL  60
   61 PLTNDDSLHR ALASGPPPLR LLVQKR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.154902
Match:	1wmhB
Description:	Crystal structure of a PB1 domain complex of Protein kinase c iota and Par6 alpha
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits