YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|56554498
Organism:	Bacillus subtilis
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56554498.

Description	E-value	Query Range	Subject Range
RSMG_ENTFA - Ribosomal RNA small subunit methyltransferase G OS=Enterococcus faecalis (strain ATCC 700802 / V583)... RSMG_ENTFA, GIDB... - Ribosomal RNA small subunit methyltransferase G OS=Enterococcus faecalis GN=rsmG PE=3 SV=1, Methyltr...	216.0	[0..2]	[239..1]
gi\|89100945, gi\|... - gi\|89100945\|ref\|ZP_01173792.1\| glucose-inhibited division protein B [Bacillus sp. NRRL B-14911], gi\|...	213.0	[0..2]	[239..1]
RSMG_LISMF - Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes serotype 4b (strain F2365)...	213.0	[0..2]	[239..1]
gi\|47093263, gi\|... - gi\|47093263\|ref\|ZP_00231034.1\| glucose-inhibited division protein B [Listeria monocytogenes str. 4b ...	213.0	[0..2]	[239..1]
gi\|153184298, gi... - gi\|254899740\|ref\|ZP_05259664.1\| 16S rRNA methyltransferase GidB [Listeria monocytogenes J0161], gi\|1... gi\|254913057, gi... - gi\|254913057\|ref\|ZP_05263069.1\| 16S rRNA methyltransferase GidB [Listeria monocytogenes J2818], gi\|1... gi\|133731501, gi... - gi\|254937438\|ref\|ZP_05269135.1\| 16S rRNA methyltransferase GidB [Listeria monocytogenes F6900], gi\|1... GIDB_LISMO, RSMG... - Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes GN=rsmG PE=3 SV=1, Methylt... gi\|224502785 - gi\|224502785\|ref\|ZP_03671092.1\| glucose-inhibited division protein B [Listeria monocytogenes FSL R2-... gi\|47095609, gi\|... - gi\|47095609\|ref\|ZP_00233217.1\| glucose-inhibited division protein B [Listeria monocytogenes str. 1/2... RSMG_LISMO - Ribosomal RNA small subunit methyltransferase G OS=Listeria monocytogenes serovar 1/2a (strain ATCC ... gi\|255028091 - gi\|255028091\|ref\|ZP_05300042.1\| 16S rRNA methyltransferase GidB [Listeria monocytogenes LO28]	212.0	[0..2]	[239..1]
RSMG_BACCZ - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain ZK / E33L) GN=rsmG PE=3 S...	212.0	[0..2]	[239..1]
GIDB_BACHK, RSMG... - Ribosomal RNA small subunit methyltransferase G OS=Bacillus thuringiensis subsp. konkukian GN=rsmG P... RSMG_BACC1 - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=... gi\|254761364 - gi\|254761364\|ref\|ZP_05213386.1\| 16S rRNA methyltransferase GidB [Bacillus anthracis str. Australia 9... gi\|30260178, gi\|... - gi\|30265500\|ref\|NP_847877.1\| glucose-inhibited division protein B [Bacillus anthracis str. Ames], gi... gi\|254755956 - gi\|254755956\|ref\|ZP_05207988.1\| 16S rRNA methyltransferase GidB [Bacillus anthracis str. Vollum] gi\|21397964, gi\|... - gi\|65317463\|ref\|ZP_00390422.1\| COG0357: Predicted S-adenosylmethionine-dependent methyltransferase i... RSMG_BACAH - Ribosomal RNA small subunit methyltransferase G OS=Bacillus thuringiensis (strain Al Hakam) GN=rsmG ... gi\|254742134 - gi\|254742134\|ref\|ZP_05199821.1\| 16S rRNA methyltransferase GidB [Bacillus anthracis str. Kruger B] gi\|47554669, gi\|... - gi\|47568681\|ref\|ZP_00239378.1\| methyltransferase GidB [Bacillus cereus G9241], gi\|47554669\|gb\|EAL130... gi\|254735157 - gi\|254735157\|ref\|ZP_05192867.1\| 16S rRNA methyltransferase GidB [Bacillus anthracis str. Western Nor... gi\|254724140 - gi\|254724140\|ref\|ZP_05185925.1\| 16S rRNA methyltransferase GidB [Bacillus anthracis str. A1055] RSMG_BACHK - Ribosomal RNA small subunit methyltransferase G OS=Bacillus thuringiensis subsp. konkukian (strain 9... gi\|254687077 - gi\|254687077\|ref\|ZP_05150935.1\| 16S rRNA methyltransferase GidB [Bacillus anthracis str. CNEVA-9066] gi\|49182246, gi\|... - gi\|49188319\|ref\|YP_031572.1\| glucose-inhibited division protein B [Bacillus anthracis str. Sterne], ... RSMG_BACAA - Ribosomal RNA small subunit methyltransferase G OS=Bacillus anthracis (strain A0248) GN=rsmG PE=3 SV... gi\|47506216, gi\|... - gi\|47531068\|ref\|YP_022417.1\| glucose-inhibited division protein B [Bacillus anthracis str. 'Ames Anc... gi\|228583789, gi... - gi\|229199694\|ref\|ZP_04326337.1\| Methyltransferase GidB [Bacillus cereus m1293], gi\|228583789\|gb\|EEK4... gi\|229187711, gi... - gi\|229187711\|ref\|ZP_04314847.1\| Methyltransferase GidB [Bacillus cereus BGSC 6E1], gi\|228595779\|gb\|E... gi\|229142231, gi... - gi\|229142231\|ref\|ZP_04270755.1\| Methyltransferase GidB [Bacillus cereus BDRD-ST26], gi\|228641249\|gb\|... gi\|229124985, gi... - gi\|229124985\|ref\|ZP_04254159.1\| Methyltransferase GidB [Bacillus cereus 95/8201], gi\|228658486\|gb\|EE... gi\|228688840, gi... - gi\|229094593\|ref\|ZP_04225660.1\| Methyltransferase GidB [Bacillus cereus Rock3-42], gi\|228688840\|gb\|E... gi\|228949204, gi... - gi\|228949204\|ref\|ZP_04111472.1\| Methyltransferase GidB [Bacillus thuringiensis serovar monterrey BGS... gi\|228936762, gi... - gi\|228936762\|ref\|ZP_04099553.1\| Methyltransferase GidB [Bacillus thuringiensis serovar andalousiensi... gi\|228829207, gi... - gi\|228930488\|ref\|ZP_04093488.1\| Methyltransferase GidB [Bacillus thuringiensis serovar pondicheriens... gi\|228918094, gi... - gi\|228918094\|ref\|ZP_04081622.1\| Methyltransferase GidB [Bacillus thuringiensis serovar pulsiensis BG... gi\|177655291, gi... - gi\|177655291\|ref\|ZP_02936845.1\| glucose-inhibited division protein B [Bacillus anthracis str. A0174]... RSMG_BACAC - Ribosomal RNA small subunit methyltransferase G OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) G... gi\|190569287, gi... - gi\|190569287\|ref\|ZP_03022181.1\| 16S rRNA methyltransferase GidB [Bacillus anthracis Tsiankovskii-I],... RSMG_BACC3 - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain 03BB102) GN=rsmG PE=3 SV=... gi\|195991308, gi... - gi\|196036141\|ref\|ZP_03103541.1\| 16S rRNA methyltransferase GidB [Bacillus cereus W], gi\|195991308\|gb... gi\|196023696, gi... - gi\|196045489\|ref\|ZP_03112720.1\| 16S rRNA methyltransferase GidB [Bacillus cereus 03BB108], gi\|196023... gi\|206745904, gi... - gi\|206975810\|ref\|ZP_03236721.1\| 16S rRNA methyltransferase GidB [Bacillus cereus H3081.97], gi\|20674... RSMG_BACC0 - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain AH820) GN=rsmG PE=3 SV=1 RSMG_BACCQ - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain Q1) GN=rsmG PE=3 SV=1 RSMG_BACAN - Ribosomal RNA small subunit methyltransferase G OS=Bacillus anthracis GN=rsmG PE=3 SV=1 gi\|165873015, gi... - gi\|165873015\|ref\|ZP_02217636.1\| glucose-inhibited division protein B [Bacillus anthracis str. A0488]... gi\|167635020, gi... - gi\|167635020\|ref\|ZP_02393337.1\| glucose-inhibited division protein B [Bacillus anthracis str. A0442]... gi\|167641727, gi... - gi\|167641727\|ref\|ZP_02399970.1\| glucose-inhibited division protein B [Bacillus anthracis str. A0193]... gi\|170666565, gi... - gi\|170689463\|ref\|ZP_02880653.1\| glucose-inhibited division protein B [Bacillus anthracis str. A0465]... gi\|170127491, gi... - gi\|170707495\|ref\|ZP_02897948.1\| glucose-inhibited division protein B [Bacillus anthracis str. A0389]...	211.0	[0..2]	[239..1]
gi\|253730395, gi... - gi\|253730395\|ref\|ZP_04864560.1\| glucose-inhibited division protein B [Staphylococcus aureus subsp. a... RSMG_STAAE - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain Newman) GN=rsmG PE=... RSMG_STAAT - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain USA300 / TCH1516) G... RSMG_STAAW - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain MW2) GN=rsmG PE=3 S... RSMG_STAA8 - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain NCTC 8325) GN=rsmG ... RSMG_STAA3 - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain USA300) GN=rsmG PE=... gi\|87161954\|ref\|... - glucose-inhibited division protein B [Staphylococcus aureus subsp. aureus USA300], glucose-inhibited... RSMG_STAAS - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain MSSA476) GN=rsmG PE... gi\|251812831, gi... - gi\|251812831\|ref\|ZP_04827304.1\| glucose-inhibited division protein B [Staphylococcus aureus subsp. a... RSMG_STAAC - Ribosomal RNA small subunit methyltransferase G OS=Staphylococcus aureus (strain COL) GN=rsmG PE=3 S...	211.0	[0..2]	[238..1]
RSMG_BACC4 - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain B4264) GN=rsmG PE=3 SV=1 RSMG_BACCR - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM... gi\|228817057, gi... - gi\|228942631\|ref\|ZP_04105163.1\| Methyltransferase GidB [Bacillus thuringiensis serovar berliner ATCC... gi\|228905426, gi... - gi\|228905426\|ref\|ZP_04069381.1\| Methyltransferase GidB [Bacillus thuringiensis IBL 4222], gi\|2288542... gi\|228961746, gi... - gi\|228961746\|ref\|ZP_04123349.1\| Methyltransferase GidB [Bacillus thuringiensis serovar pakistani str... gi\|228955732, gi... - gi\|228955732\|ref\|ZP_04117727.1\| Methyltransferase GidB [Bacillus thuringiensis serovar kurstaki str.... gi\|228784171, gi... - gi\|228975561\|ref\|ZP_04136113.1\| Methyltransferase GidB [Bacillus thuringiensis serovar thuringiensis... gi\|228968634, gi... - gi\|228968634\|ref\|ZP_04129617.1\| Methyltransferase GidB [Bacillus thuringiensis serovar sotto str. T0... gi\|229020707, gi... - gi\|229020707\|ref\|ZP_04177434.1\| Methyltransferase GidB [Bacillus cereus AH1273], gi\|228740602\|gb\|EEL... gi\|228982197, gi... - gi\|228982197\|ref\|ZP_04142486.1\| Methyltransferase GidB [Bacillus thuringiensis Bt407], gi\|228777549\|... gi\|228722214, gi... - gi\|229051151\|ref\|ZP_04194695.1\| Methyltransferase GidB [Bacillus cereus AH676], gi\|228722214\|gb\|EEL7... gi\|229026923, gi... - gi\|229026923\|ref\|ZP_04183246.1\| Methyltransferase GidB [Bacillus cereus AH1272], gi\|228734381\|gb\|EEL... gi\|74491027, gi\|... - gi\|75761488\|ref\|ZP_00741452.1\| Methyltransferase gidB [Bacillus thuringiensis serovar israelensis AT... gi\|228683524, gi... - gi\|229099909\|ref\|ZP_04230832.1\| Methyltransferase GidB [Bacillus cereus Rock3-29], gi\|228683524\|gb\|E... gi\|228710193, gi... - gi\|229072947\|ref\|ZP_04206143.1\| Methyltransferase GidB [Bacillus cereus F65185], gi\|228710193\|gb\|EEL... RSMG_BACC2 - Ribosomal RNA small subunit methyltransferase G OS=Bacillus cereus (strain G9842) GN=rsmG PE=3 SV=1 gi\|229118972, gi... - gi\|229118972\|ref\|ZP_04248317.1\| Methyltransferase GidB [Bacillus cereus Rock1-3], gi\|228664497\|gb\|EE... gi\|228670574, gi... - gi\|229112895\|ref\|ZP_04242426.1\| Methyltransferase GidB [Bacillus cereus Rock1-15], gi\|228670574\|gb\|E... gi\|229148032, gi... - gi\|229148032\|ref\|ZP_04276371.1\| Methyltransferase GidB [Bacillus cereus BDRD-ST24], gi\|228635457\|gb\|... gi\|228652745, gi... - gi\|229130728\|ref\|ZP_04259681.1\| Methyltransferase GidB [Bacillus cereus BDRD-Cer4], gi\|228652745\|gb\|... gi\|228601761, gi... - gi\|229181728\|ref\|ZP_04309051.1\| Methyltransferase GidB [Bacillus cereus 172560W], gi\|228601761\|gb\|EE...	211.0	[0..2]	[239..1]
RSMG_LISIN - Ribosomal RNA small subunit methyltransferase G OS=Listeria innocua serovar 6a (strain CLIP 11262) G... GIDB_LISIN, RSMG... - Ribosomal RNA small subunit methyltransferase G OS=Listeria innocua GN=rsmG PE=3 SV=1, Methyltransfe...	211.0	[0..2]	[239..1]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NMNIEEFTSG LAEKGISLSP RQLEQFELYY DMLVEWNEKI NLTSITEKKE VYLKHFYDSI  60
   61 TAAFYVDFNQ VNTICDVGAG AGFPSLPIKI CFPHLHVTIV DSLNKRITFL EKLSEALQLE 120
  121 NTTFCHDRAE TFGQRKDVRE SYDIVTARAV ARLSVLSELC LPLVKKNGLF VALKAASAEE 180
  181 ELNAGKKAIT TLGGELENIH SFKLPIEESD RNIMVIRKIK NTPKKYPRKP GTPNKSPIEG 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.0
Match:	1xdzA
Description:	Crystal Structure of Gram_Positive Bacillus subtilis Glucose inhibited Division protein B (gidB), Structural genomics, MCSG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methyltransferase activity	4.15445027778357	bayes_pls_golite062009
rRNA methyltransferase activity	4.09362182773099	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.07153733729662	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	3.39429041855776	bayes_pls_golite062009
RNA methyltransferase activity	3.07428840534971	bayes_pls_golite062009
N-methyltransferase activity	3.0539218951403	bayes_pls_golite062009
protein methyltransferase activity	3.01384869242051	bayes_pls_golite062009
transferase activity	2.22303238506686	bayes_pls_golite062009
histone methyltransferase activity	1.90505369820945	bayes_pls_golite062009
rRNA (adenine) methyltransferase activity	1.83964463328968	bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity	1.75675289134467	bayes_pls_golite062009
DNA-methyltransferase activity	1.63765148226572	bayes_pls_golite062009
arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
protein-arginine N-methyltransferase activity	1.6030970825293	bayes_pls_golite062009
catalytic activity	1.25333584501255	bayes_pls_golite062009
tRNA methyltransferase activity	1.12859857407629	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	1.10713374933008	bayes_pls_golite062009
histone-arginine N-methyltransferase activity	1.05897361334523	bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity	0.703178429468566	bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity	0.639377525568296	bayes_pls_golite062009
O-methyltransferase activity	0.250946859465502	bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity	0.130104080746388	bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific)	0.130042730841119	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: