YRC Public Data Repository - Protein Structure Prediction

Protein:	NUSB_CAMJR
Organism:	Campylobacter jejuni RM1221
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUSB_CAMJR.

Description	E-value	Query Range	Subject Range
gi\|49080752 - gi\|49080752\|gb\|AAT50054.1\| PA4052 [synthetic construct]	137.0	[0..2]	[128..19]
gi\|94417012, gi\|... - gi\|94417012\|ref\|ZP_01296834.1\| hypothetical protein PaerP_01001208 [Pseudomonas aeruginosa PA7], gi\|...	137.0	[0..2]	[128..19]
NUSB_PSEAE - N utilization substance protein B homolog OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C /... gi\|46164642, gi\|... - gi\|46164642\|ref\|ZP_00205138.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa UCB... gi\|84325185, gi\|... - gi\|84325185\|ref\|ZP_00973225.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa 219... gi\|107103566 - gi\|107103566\|ref\|ZP_01367484.1\| hypothetical protein PaerPA_01004636 [Pseudomonas aeruginosa PACS2] gi\|218889667, gi... - gi\|218889667\|ref\|YP_002438531.1\| transcription antitermination protein NusB [Pseudomonas aeruginosa ... NUSB_PSEAE - N utilization substance protein B homolog OS=Pseudomonas aeruginosa GN=nusB PE=3 SV=1	137.0	[0..2]	[128..19]
gi\|126168872, gi... - gi\|84319131\|ref\|ZP_00967534.1\| COG0781: Transcription termination factor [Pseudomonas aeruginosa C37...	136.0	[0..2]	[128..19]
NUSB_THETN - N utilization substance protein B homolog OS=Thermoanaerobacter tengcongensis GN=nusB PE=3 SV=1 NUSB_CALS4 - N utilization substance protein B homolog OS=Caldanaerobacter subterraneus subsp. tengcongensis (str...	135.0	[0..4]	[131..3]
gi\|51856176, gi\|... - gi\|51892487\|ref\|YP_075178.1\| hypothetical protein STH1349 [Symbiobacterium thermophilum IAM 14863], ...	134.0	[0..5]	[129..10]
gi\|88925497, gi\|... - gi\|88944826\|ref\|ZP_01148049.1\| Fmu, rRNA SAM-dependent methyltransferase:NusB antitermination factor...	133.0	[0..6]	[131..5]
gi\|67874767, gi\|... - gi\|67874767\|ref\|ZP_00504380.1\| Fmu, rRNA SAM-dependent methyltransferase [Clostridium thermocellum A...	131.0	[0..6]	[132..3]
NUSB_SHELP - N utilization substance protein B homolog OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=nus...	131.0	[0..1]	[131..1]
gi\|67085734, gi\|... - gi\|67157057\|ref\|ZP_00418419.1\| Antitermination protein NusB [Azotobacter vinelandii AvOP], gi\|670857... gi\|67157057, gi\|... - gi\|67157057\|ref\|ZP_00418419.1\| Antitermination protein NusB [Azotobacter vinelandii AvOP], ref\|ZP_00...	130.0	[0..1]	[128..18]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATRHQVRQS VISLLYAFEL NSQNNVFVDE ILDEKKIRNE QKNFTLNLYN GILDNLNNID  60
   61 ETLNSFLNDN QITALGHVER AILRLGAYEL LFTDTPSAIV INEAIELAKE LANDNSPKFI 120
  121 NGVLDALIKA KK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	1tztA
Description:	T. maritima NusB, P21
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription termination factor activity	7.08625510047476	bayes_pls_golite062009
transcription regulator activity	3.63525538465601	bayes_pls_golite062009
binding	0.569728786489819	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: