YRC Public Data Repository - Protein Structure Prediction

Protein:	MGSA_OCEIH
Organism:	Oceanobacillus iheyensis
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MGSA_OCEIH.

Description	E-value	Query Range	Subject Range
MGSA_CALBD - Methylglyoxal synthase OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320) GN=... MGSA_CALS8 - Methylglyoxal synthase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T ...	229.0	[0..1]	[130..1]
gi\|55670468, gi\|... - gi\|55670469\|pdb\|1VMD\|B Chain B, Crystal Structure Of Methylglyoxal Synthase (Tm1185) From Thermotoga...	227.0	[0..2]	[137..29]
gi\|214041268, gi... - gi\|254484146\|ref\|ZP_05097363.1\| methylglyoxal synthase [Marinitoga piezophila KA3], gi\|224399427\|ref... gi\|119828921, gi... - gi\|148270690\|ref\|YP_001245150.1\| methylglyoxal synthase [Thermotoga petrophila RKU-1], gi\|147736234\|... gi\|170176917, gi... - gi\|170289414\|ref\|YP_001739652.1\| methylglyoxal synthase [Thermotoga sp. RQ2], gi\|170176917\|gb\|ACB099... gi\|4981735, gi\|1... - gi\|4981735\|gb\|AAD36260.1\|AE001775_3 methylglyoxal synthase [Thermotoga maritima MSB8], gi\|15643941\|r... gi\|7451076 - gi\|7451076\|pir\|\|G72284 methylglyoxal synthase - Thermotoga maritima (strain MSB8)	227.0	[0..2]	[137..17]
MGSA_VIBVU - Methylglyoxal synthase OS=Vibrio vulnificus GN=mgsA PE=3 SV=1 MGSA_VIBVY - Methylglyoxal synthase OS=Vibrio vulnificus (strain YJ016) GN=mgsA PE=3 SV=1 MGSA_VIBVU - Methylglyoxal synthase OS=Vibrio vulnificus (strain CMCP6) GN=mgsA PE=3 SV=1	226.0	[0..2]	[138..13]
MGSA_LEPBL - Methylglyoxal synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=mgsA PE=3 ... MGSA_LEPBJ - Methylglyoxal synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=mgsA PE=3...	226.0	[0..2]	[133..11]
gi\|90413297, gi\|... - gi\|90413297\|ref\|ZP_01221291.1\| methylglyoxal synthase [Photobacterium profundum 3TCK], gi\|90325698\|g...	225.0	[0..2]	[137..13]
MGSA_EXIS2 - Methylglyoxal synthase OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=mgsA ...	225.0	[0..1]	[137..1]
MGSA_HAES1 - Methylglyoxal synthase OS=Haemophilus somnus (strain 129Pt) GN=mgsA PE=3 SV=1	225.0	[0..2]	[136..13]
gi\|90439871, gi\|... - gi\|90579038\|ref\|ZP_01234848.1\| methylglyoxal synthase [Vibrio angustum S14], gi\|90439871\|gb\|EAS65052...	225.0	[0..2]	[137..13]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIALIAHDE KKEDMIQFTT AYTHVLSKHR LFATGTTGMK ISNATGLQIH RFQSGPLGGD  60
   61 QQIGAMIANG EMDMIIFFRD PLTAQPHEPD VSALMRLCDV HQIPLVTNIA GAEIFIHGLS 120
  121 RGDLKWREII KERQEKEGTP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.0
Match:	1vmdA
Description:	Crystal structure of Methylglyoxal synthase (TM1185) from Thermotoga maritima at 2.06 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylglyoxal synthase activity	7.67158041469211	bayes_pls_golite062009
catalytic activity	2.05174935916901	bayes_pls_golite062009
carbon-oxygen lyase activity	0.8193600732138	bayes_pls_golite062009
carbon-oxygen lyase activity, acting on phosphates	0.74427062677768	bayes_pls_golite062009
lyase activity	0.129701662862796	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: