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View Structure Prediction Details

Protein: DAPF_LEPIC
Organism: Leptospira interrogans serovar Copenhageni
Length: 281 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DAPF_LEPIC.

Description E-value Query
Range
Subject
Range
DAPF_LEPIN - Diaminopimelate epimerase OS=Leptospira interrogans GN=dapF PE=3 SV=1
DAPF_LEPIN - Diaminopimelate epimerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar Lai (strai...
322.0 [0..1] [281..1]

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Predicted Domain #1
Region A:
Residues: [1-281]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLKFTKME GIGNDYVYID STRNDIRLTP EQIQKISDRN FGIGSDGVIF IRNSKQGDFM  60
   61 MDMYNSDGSS SEMCGNGIRC VAKYIYDHGL TSSKNPKIET GAGILEVDLK IGSGNKVDLV 120
  121 SVDMGKPVLV PSQIPVVWKN EETIIDQPLE IGDKNLKFTA VSMGNPHCVI FVDDSDEFPV 180
  181 RGIGPLIERH SIFPKRVNVE FVTIRGKDHL YQRTWERGAG ETLACGTGAC AVMVAGNLTG 240
  241 RSGKDVQIDL RGGTLRIQWQ ESGNILMTGP AREIFSGEIE I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.221849
Match: 1gqzA
Description: Diaminopimelate epimerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
diaminopimelate epimerase activity 4.22926504608084 bayes_pls_golite062009
amino-acid racemase activity 3.36270508746492 bayes_pls_golite062009
racemase and epimerase activity, acting on amino acids and derivatives 3.23874676534548 bayes_pls_golite062009
catalytic activity 1.37892559560737 bayes_pls_golite062009
racemase and epimerase activity 0.0469151339756061 bayes_pls_golite062009
isomerase activity 0.0304048110491 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle