YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: AROQ_PHOLL
Organism: Photorhabdus luminescens subsp. laumondii
Length: 150 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AROQ_PHOLL.

Description E-value Query
Range
Subject
Range
gi|68559799, gi|... - gi|94311994|ref|YP_585204.1| 3-dehydroquinate dehydratase [Ralstonia metallidurans CH34], gi|9335584...
247.0 [0..5] [145..14]

Back

Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKFHILLL NGPNLNMLGT REPDIYGSLT LDDIVSKLSE EAHQSGVKFS HLQSNAEFEL  60
   61 INRIHSAQGN TDFILINPAA FTHTSVALRD ALLTVKIPFI EIHLSNVHAR EPFRHHSYLS 120
  121 DLAVGVICGL GVDGYSFALQ AAVNRLSKFN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.69897
Match: 1uqrA
Description: Type II 3-dehydroquinate dehydratase (DHQase) from Actinobacillus pleuropneumoniae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3-dehydroquinate dehydratase activity 4.89182009956779 bayes_pls_golite062009
catalytic activity 2.05174935916901 bayes_pls_golite062009
lyase activity 1.8611664916998 bayes_pls_golite062009
carbon-oxygen lyase activity 1.85854553303143 bayes_pls_golite062009
hydro-lyase activity 1.7760166106171 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle