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View Structure Prediction Details

Protein: coil-PC
Organism: Drosophila melanogaster
Length: 488 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for coil-PC.

Description E-value Query
Range
Subject
Range
coil-PD - The gene coilin is referred to in FlyBase by the symbol Dmel\coil (CG8710, FBgn0033265). It is a pro...
887.0 [0..1] [488..147]

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Predicted Domain #1
Region A:
Residues: [1-315]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPGPSVQSK LLTNKGTPKA PETQTEVSNM SANIETENKE SAPQIKNKSK NKKPTKSPEA  60
   61 SDQVENEPAP KSISRCTLKE GKMSESKNQE TSPDILSEKS GVVTKENETR EEQQDKTHLE 120
  121 SNKIPDKLSQ LKAGDQIEKS PGIAASLLSI SFRSPLLEMP FNVPRIFQFP TKKQQIEILE 180
  181 YKKLKPISPR FLLQKGAKSD DTAKQFPSNG KDSTLKPKSY EILHDEELPD VKDKKNVSEG 240
  241 IKRAVAPLCE DIIETSTTLP GAIGAVESAY LDNSTEAETT LPSEAEATNP LELTESFLQN 300
  301 NTSMEKTPKV EKILP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [316-488]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDGSASPIKN NVDSKDVKTV TVPIFEEQLV SDSDDDVMLV DDSNIDVSYG DSDIEPIPVV  60
   61 ENRQSLDIIR DLLRTATPLN SLPSRGDTVI FKLLKIKGNA NSGTTEFVAG RCTYVNRRTK 120
  121 IVTVETITYP PEIGRMLRQY YMSGLDESSE DVRTLSIHLK DMLEAKIIVA TID

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle