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View Structure Prediction Details

Protein: lfi-1
Organism: Caenorhabditis elegans
Length: 372 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lfi-1.

Description E-value Query
Range
Subject
Range
lfi-1 - probable myofibrillar protein status:Partially_confirmed UniProt:Q23081 protein_id:AAM69078.1
304.0 [0..1] [370..1]

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Predicted Domain #1
Region A:
Residues: [1-166]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFFSCGVNSS SPGRQLVVSE SVSEDNLHNP SSHALRTLSP VSPPTANSSS STSRSCSPVV  60
   61 RAETIVAGKW THISGKVSVR PLTPSETESV LDRQRQKNRR SSRKDKLKMS THDDTRSSGG 120
  121 GDGTIHIPSA DAKEPTPESP GSRSNYGEFY WDTSGENNYH HTSSFD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [167-372]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDLLLEIDSS RGAAVARLDR TQDDLNKFRQ RIDNNVEQQR EYSEMMAALQ NKVHEYRKHI  60
   61 AELEGRMVGA RNRMLDDPTS NVMIFDNYDP GNTYITNHNV ELWSPARGKR ETILGGGGAP 120
  121 GLTTVNVHAG AGYSGSGVAG YGGGVQAMVG DPNANYEMIA RLDEERRRSD EYRMQWENER 180
  181 QKSLSLEDEN DRLRREFERY ANDSNL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.09691
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle