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View Structure Prediction Details

Protein: CE38200
Organism: Caenorhabditis elegans
Length: 716 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE38200.

Description E-value Query
Range		 Subject
Range
gi|109116848, gi... - gi|109116850|ref|XP_001116419.1| PREDICTED: similar to FtsJ homolog 3 isoform 3 [Macaca mulatta], gi...
 454.0 [0..1] [716..1]

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Predicted Domain #1
Region A:
Residues: [1-240] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKKVKIGKQ RRDKYYKLAK EAGYRSRAAF KLVQLNKRFE FLEKSRATVD LCAAPGGWMQ  60
   61 VASQFMPVSS LIVGVDLAPI KPIKNCIALQ GDITTNETRA AIKKELKTWS ADCVLHDGAP 120
  121 NVGLNWVHDA FQQNCLTLSA LKLATQILRK GGTFVTKVFR SNDYSCLIRV FEKLFKRVHV 180
  181 WKPAASRLES AEIFVVCEVY QKPDKVGAEY LDPKKVFANP DGSEGTKPNP QNLLIGKQKK 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 79.0
Match: 1eizA
Description: RNA methyltransferase FtsJ
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
methyltransferase activity 4.15445027778357 bayes_pls_golite062009
rRNA methyltransferase activity 4.09362182773099 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 4.07153733729662 bayes_pls_golite062009
N-methyltransferase activity 3.67177992319602 bayes_pls_golite062009
protein methyltransferase activity 3.5512266163483 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 3.39429041855776 bayes_pls_golite062009
RNA methyltransferase activity 3.07428840534971 bayes_pls_golite062009
histone methyltransferase activity 2.49492581548369 bayes_pls_golite062009
transferase activity 2.22303238506686 bayes_pls_golite062009
protein-arginine N-methyltransferase activity 2.06652984530965 bayes_pls_golite062009
arginine N-methyltransferase activity 2.06652984530965 bayes_pls_golite062009
rRNA (adenine) methyltransferase activity 1.83964463328968 bayes_pls_golite062009
rRNA (adenine-N6,N6-)-dimethyltransferase activity 1.75675289134467 bayes_pls_golite062009
DNA-methyltransferase activity 1.63765148226572 bayes_pls_golite062009
histone-arginine N-methyltransferase activity 1.63076727020333 bayes_pls_golite062009
protein-arginine omega-N monomethyltransferase activity 1.26493190370687 bayes_pls_golite062009
catalytic activity 1.25333584501255 bayes_pls_golite062009
tRNA methyltransferase activity 1.12859857407629 bayes_pls_golite062009
rRNA (guanine) methyltransferase activity 1.10713374933008 bayes_pls_golite062009
histone methyltransferase activity (H4-R3 specific) 0.720411427168235 bayes_pls_golite062009
site-specific DNA-methyltransferase (adenine-specific) activity 0.703178429468566 bayes_pls_golite062009
protein-arginine omega-N asymmetric methyltransferase activity 0.606920378432989 bayes_pls_golite062009
binding 0.348263200169904 bayes_pls_golite062009
transcription regulator activity 0.316272167949639 bayes_pls_golite062009
tRNA (cytosine-5-)-methyltransferase activity 0.299393192819978 bayes_pls_golite062009
tRNA (cytosine)-methyltransferase activity 0.299393192819978 bayes_pls_golite062009
DNA binding 0.26945982114479 bayes_pls_golite062009
O-methyltransferase activity 0.250946859465502 bayes_pls_golite062009
rRNA (guanine-N1-)-methyltransferase activity 0.234572322347698 bayes_pls_golite062009
nucleic acid binding 0.0339414270453529 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [241-621] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKAEGYDTDS LAIHSTINAT DFIKSSGYLD ILGTANVITL DDEKWKNHEK TTEEVIEYMN  60
   61 DVKVLGPREL RVLLRWRKSM LETLEEQRKA VEGEAKEVEI EENLTEEQLE DRAMAEIDEL 120
  121 IAKASEDEKA ALKKKKKKML KAKARVLKRR ELKMIIDGDE GPQAEDQEVF QLKKIRKAKE 180
  181 LAEITKDTQA PDFDMMEDGD SDEEEGLGEG EWETHGEEGE NSDEDENELI HTEKSGMSKM 240
  241 EKRNARTESW FEKEEISGLV SDEDDDDEMN AIEKHIGKNR SKKTENYENT VSFDDSKGKK 300
  301 KGKKGGKGGE DDGFNTNDAD EQASESESSD AEMDEVAKEK LSRFDAQIDL DDDDEEERYE 360
  361 DEGRRAAKRK CDKKIIGEDL K

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [622-716] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVAKKRKLTP EQLAIGEQMI YSAKAARNLE DEAWNRYANN DEDLPDWFAD DEKKHYFKQT  60
   61 PVTKEQVALY RERMREFNAR PSKKVAEAKA RKQKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.09691
Match: 2dfsA
Description: No description for 2dfsA was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle