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View Structure Prediction Details

Protein: nas-2
Organism: Caenorhabditis elegans
Length: 293 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nas-2.

Description E-value Query
Range
Subject
Range
gi|47223677 - gi|47223677|emb|CAF99286.1| unnamed protein product [Tetraodon nigroviridis]
203.0 [0..3] [293..9]

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Predicted Domain #1
Region A:
Residues: [1-293]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFPLLLTLI LPNFVAPKVL EPEKDDEIAV STQREKTFFD MKLILTKLPT FEPSKYGHIN  60
   61 IPLRKKRGIA LHPLQWASYL WPNAEVPYDI ATHYTSTEKS IILSAMEAFK NVTCVRFRPR 120
  121 AATDKHYLQI NKYFNVERCF SYIGRQSSRT LFGTPEGNVE TRMRLDPACL RGNGRGIVMH 180
  181 ELMHILGFYH EHQRDDRDRR IVGSAVHYNF KIYRRAKTLY MGAYDANSIM HYNFQNLPWQ 240
  241 RRDHFSTSDI ININTFYKCK NLLSSKLAPK VPISPTSTST TAITTTNTTT TKL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 44.522879
Match: 1slmA
Description: CRYSTAL STRUCTURE OF FIBROBLAST STROMELYSIN-1: THE C-TRUNCATED HUMAN PROENZYME
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
peptidase activity 0.236595208512819 bayes_pls_golite062009
hydrolase activity 0.228739215299109 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.0742808525912246 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle