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View Structure Prediction Details

Protein: rpb-3
Organism: Caenorhabditis elegans
Length: 282 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpb-3.

Description E-value Query
Range
Subject
Range
gi|125854879, gi... - gi|41053985|ref|NP_956215.1| polymerase (RNA) II (DNA directed) polypeptide C [Danio rerio], gi|2827...
263.0 [0..1] [279..1]

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Predicted Domain #1
Region A:
Residues: [1-282]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPYANQPNIE VTELTNDIIK FVLWDTDLSV ANSLRRVFMA EVPTIAIDWV QIETNTSVLH  60
   61 DEFIAHRMGL IPFISDYHVE KMQYTRDCEC AEFCDECSIP FILQMKCKDE ATLAVTTEHL 120
  121 MPMHNLDTTV RPACGKALRE RGSTRDEFHN REEILIVKLR KGQELNLKAY VKKGFGKEHA 180
  181 KWNPTCGVAF EYDPDNALRH TIYPNVEEWP RSDHSSLPED STEKEAPFEP DNKPNKFWFS 240
  241 IEGTGALPAQ RIVTMGIGIL KRKLEELNMA LSNELQAHAQ QQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 56.045757
Match: 1i3qC
Description: RPB3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle