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View Structure Prediction Details

Protein: hupC
Organism: Rhodopseudomonas palustris CGA009
Length: 242 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for hupC.

Description E-value Query
Range
Subject
Range
gi|115517201, gi... - gi|77738799|ref|ZP_00807292.1| Nickel-dependent hydrogenase b-type cytochrome subunit [Rhodopseudomo...
212.0 [0..3] [242..2]

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Predicted Domain #1
Region A:
Residues: [1-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTEIARVQG AIDSAGERAR SLQTVYVYQA PVRLWHWVNA LLIVALCVTG YLIGSPPPSV  60
   61 PGEASASFQM GYIRFIHFAS GQTLIVFFIL RAYWAIVGNK YSKQLFYMPI TNRTWWWGMI 120
  121 YEFKWYAFLV RDPKKYIGHN PLAHVAMFTF MLFMIFMMCS GMALYAEGQG IDSWQYKMFG 180
  181 FMFWIFPNSQ DLHTVHHLGM WAIVVFVIVH IYAAVREDIL SRQSMISSII SGERLFRDDL 240
  241 PD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.09691
Match: 1kqfC
Description: Formate dehydrogenase N, cytochrome (gamma) subunit
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
hydrogen ion transmembrane transporter activity 4.29455986972274 bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity 4.14658254808421 bayes_pls_golite062009
ubiquinol-cytochrome-c reductase activity 3.64153536514168 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor 3.64153536514168 bayes_pls_golite062009
inorganic cation transmembrane transporter activity 3.50341532760587 bayes_pls_golite062009
cation transmembrane transporter activity 3.24971217721974 bayes_pls_golite062009
oxidoreductase activity, acting on diphenols and related substances as donors 3.24610027021932 bayes_pls_golite062009
ion transmembrane transporter activity 3.0416933490072 bayes_pls_golite062009
electron carrier activity 2.51878542975969 bayes_pls_golite062009
oxidoreductase activity 1.7836019763102 bayes_pls_golite062009
formate dehydrogenase activity 1.59045445940899 bayes_pls_golite062009
catalytic activity 1.19342057724506 bayes_pls_golite062009
substrate-specific transmembrane transporter activity 0.173080554590997 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor 0.146687943468395 bayes_pls_golite062009
substrate-specific transporter activity 0.0890676728517352 bayes_pls_golite062009
oxidoreductase activity, acting on the aldehyde or oxo group of donors 0.0525552238787478 bayes_pls_golite062009
binding 0.00724604692107611 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle