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View Structure Prediction Details

Protein: gi|56785229, gi|...
Organism: Oryza sativa Japonica Group
Length: 354 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|56785229, gi|....

Description E-value Query
Range
Subject
Range
gi|53982670, gi|... - gi|53982670|gb|AAV25649.1| unknown protein [Oryza sativa Japonica Group], gi|222631631|gb|EEE63763.1...
325.0 [0..1] [352..1]

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Predicted Domain #1
Region A:
Residues: [1-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWALTPNSGG SSCLPARRTP PPLAAAGEAG SLAAGPGRWC SWRRRQPAER WPKLAVSASG  60
   61 RKSKGGRDEG GGDEPKKNKA ASSSSSGKGD ASAPSGDVSN NELQSNDTMY VPGNLSYWRD 120
  121 VRASFVVPKV QTVDAHTLPQ AATDAPVHCL PRKWAHSIP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [160-354]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPESGCVLVA AEELDGNGTF ERTVILLLRL GSRDAYDGPF GVILNRPLYT KMKHVNPSFR  60
   61 NQATPFSDCS LFFGGPVDMS IFLMRTTDDR PIKGFEEVSP GVCFGFRTDL EKASALLKSG 120
  121 AVKPEDLNFY VGYSAWDYDQ LLSEIDQGYW HVTSCSSGLI SDSLATDPSC LWTEILKLMG 180
  181 GQYAELSQKP KEDGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.30103
Match: 2hafA
Description: No description for 2hafA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle