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View Structure Prediction Details

Protein: gi|30249291, gi|...
Organism: Nitrosomonas europaea ATCC 19718
Length: 67 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30249291, gi|....

Description E-value Query
Range
Subject
Range
gi|114332012, gi... - gi|114332012|ref|YP_748234.1| cold-shock DNA-binding domain-containing protein [Nitrosomonas eutroph...
119.0 [0..1] [67..1]

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Predicted Domain #1
Region A:
Residues: [1-67]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTGTVKWFN DAKGFGFITP DDGSEDLFAH FSAINMNGFK TLREGQKVSF DVTQGQKGKQ  60
   61 ASNIQAP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.045757
Match: 1mjcA
Description: CRYSTAL STRUCTURE OF CSPA, THE MAJOR COLD SHOCK PROTEIN OF ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
nucleic acid binding 2.67999218416128 bayes_pls_golite062009
DNA binding 2.0554473444871 bayes_pls_golite062009
binding 1.49502978097244 bayes_pls_golite062009
transcription regulator activity 0.537716356194117 bayes_pls_golite062009
structural constituent of ribosome 0.0989196136046104 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle