YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7226722, gi\|1...
Organism:	Neisseria meningitidis MC58
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7226722, gi|1....

Description	E-value	Query Range	Subject Range
gi\|11282841 - pir\|\|F81864 probable acyl-CoA hydrolase NMA1691 [imported] - Neisseria meningitidis (strain Z2491 se... gi\|218768474, gi... - gi\|7380332\|emb\|CAB84919.1\| putative acyl-CoA hydrolase [Neisseria meningitidis Z2491], gi\|218768474\|...	174.0	[0..1]	[160..1]
gi\|254493504, gi... - gi\|254493504\|ref\|ZP_05106675.1\| acyl-CoA hydrolase [Neisseria gonorrhoeae 1291], gi\|226512544\|gb\|EEH... gi\|240127944 - gi\|240127944\|ref\|ZP_04740605.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae SK-93-1035] gi\|193933584, gi... - gi\|194098294\|ref\|YP_002001352.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae NCCP11945], gi\|1... gi\|240014368 - gi\|240014368\|ref\|ZP_04721281.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae DGI18] gi\|239998714 - gi\|239998714\|ref\|ZP_04718638.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae 35/02] gi\|240115389 - gi\|240115389\|ref\|ZP_04729451.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae PID18] gi\|59718321, gi\|... - gi\|59801426\|ref\|YP_208138.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae FA 1090], gi\|5971832... gi\|240112644 - gi\|240112644\|ref\|ZP_04727134.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae MS11] gi\|240080998 - gi\|240080998\|ref\|ZP_04725541.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae FA19] gi\|240016801 - gi\|240016801\|ref\|ZP_04723341.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae FA6140] gi\|240125492 - gi\|240125492\|ref\|ZP_04738378.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae SK-92-679] gi\|240123241 - gi\|240123241\|ref\|ZP_04736197.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae PID332] gi\|240121930 - gi\|240121930\|ref\|ZP_04734892.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae PID24-1] gi\|240117686 - gi\|240117686\|ref\|ZP_04731748.1\| putative acyl-CoA hydrolase [Neisseria gonorrhoeae PID1]	173.0	[0..1]	[160..1]
gi\|86142718, gi\|... - gi\|86142718\|ref\|ZP_01061157.1\| acyl CoA thioester hydrolase family protein [Flavobacterium sp. MED21... gi\|86142718, gi\|... - gi\|86142718\|ref\|ZP_01061157.1\| acyl CoA thioester hydrolase family protein [Flavobacterium sp. MED21...	153.0	[0..1]	[157..1]
gi\|110335861, gi... - gi\|121595165\|ref\|YP_987061.1\| thioesterase superfamily protein [Acidovorax sp. JS42], gi\|120607245\|g... gi\|222111506, gi... - gi\|222111506\|ref\|YP_002553770.1\| thioesterase superfamily protein [Diaphorobacter sp. TPSY], gi\|2217...	150.0	[0..6]	[151..2]
gi\|34496611, gi\|... - gi\|34496611\|ref\|NP_900826.1\| acy-CoA thioester hydrolase-related protein [Chromobacterium violaceum ...	149.0	[0..1]	[154..1]
gi\|67155639, gi\|... - gi\|67155639\|ref\|ZP_00417266.1\| Thioesterase superfamily [Azotobacter vinelandii AvOP], gi\|67086583\|g... gi\|67155639, gi\|... - gi\|67155639\|ref\|ZP_00417266.1\| Thioesterase superfamily [Azotobacter vinelandii AvOP], ref\|ZP_000907...	149.0	[0..6]	[153..2]
gi\|89085248, gi\|... - gi\|89100014\|ref\|ZP_01172884.1\| hypothetical protein B14911_17595 [Bacillus sp. NRRL B-14911], gi\|890...	149.0	[0..1]	[155..1]
gi\|90022125, gi\|... - gi\|90022125\|ref\|YP_527952.1\| Acyl-CoA hydrolase-like [Saccharophagus degradans 2-40], gi\|89951725\|gb...	149.0	[0..1]	[158..1]
gi\|115588890, gi... - gi\|116053669\|ref\|YP_793996.1\| hypothetical protein PA14_72810 [Pseudomonas aeruginosa UCBPP-PA14], g... gi\|194554054, gi... - gi\|254243069\|ref\|ZP_04936391.1\| conserved hypothetical protein [Pseudomonas aeruginosa 2192], gi\|194... gi\|126169732, gi... - gi\|254237801\|ref\|ZP_04931124.1\| conserved hypothetical protein [Pseudomonas aeruginosa C3719], gi\|19... gi\|9951856, gi\|1... - gi\|9951856\|gb\|AAG08904.1\|AE004964_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], gi... gi\|218774851, gi... - gi\|218894622\|ref\|YP_002443492.1\| putative acyl-CoA thioester hydrolase [Pseudomonas aeruginosa LESB5... gi\|11348349 - pir\|\|F82956 conserved hypothetical protein PA5519 [imported] - Pseudomonas aeruginosa (strain PAO1)	148.0	[0..8]	[153..32]
gi\|17430671 - gi\|17430671\|emb\|CAD17354.1\| putative acyl-coa hydrolase or thioesterase ; protein [Ralstonia solanac... gi\|17548424 - gi\|17548424\|ref\|NP_521764.1\| acyl-CoA thioester hydrolase-related protein [Ralstonia solanacearum GM...	148.0	[0..11]	[154..7]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQQRQLPSH ELIMSELMMP DTANFSGNVH GGELLLLLDQ VAYSCASRYS GNYCVTLSVD  60
   61 KVLFKEPIHV GDLVTFYASV NYTGRTSMEI GIRVEAQNIR TGEIRHTNSC YFTMVAVKDG 120
  121 KPVPVPPLEI LTDRQRCRYE KAKKRRDISL QASGDVSCGC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1vpmA
Description:	Crystal structure of Acyl-CoA hydrolase (NP_241664.1) from Bacillus halodurans at 1.66 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	1.66884012171138	bayes_pls_golite062009
thiolester hydrolase activity	0.78966333832473	bayes_pls_golite062009
catalytic activity	0.74605540351792	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.302743904610747	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: