YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11279818
Organism:	Neisseria meningitidis
Length:	167 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11279818.

Description	E-value	Query Range	Subject Range
gi\|94970686, gi\|... - gi\|94970686\|ref\|YP_592734.1\| diguanylate cyclase with GAF sensor [Candidatus Koribacter versatilis E...	124.0	[0..1]	[166..13]
gi\|83573887, gi\|... - gi\|83590973\|ref\|YP_430982.1\| metal dependent phosphohydrolase [Moorella thermoacetica ATCC 39073], g...	120.0	[0..3]	[165..331]
gi\|116698945, gi... - gi\|71545236\|ref\|ZP_00666187.1\| GAF:Stage II sporulation E [Syntrophobacter fumaroxidans MPOB], gi\|71...	118.0	[0..1]	[164..11]
gi\|68177273, gi\|... - gi\|95929346\|ref\|ZP_01312089.1\| PTSINtr with GAF domain, PtsP [Desulfuromonas acetoxidans DSM 684], g...	116.0	[0..17]	[165..15]
gi\|71675376, gi\|... - gi\|71675376\|ref\|ZP_00673121.1\| Guanylate cyclase:GAF [Trichodesmium erythraeum IMS101], gi\|71671492\|...	115.0	[0..4]	[165..209]
gi\|91204266 - gi\|91204266\|emb\|CAJ71919.1\| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]	115.0	[0..14]	[165..111]
gi\|218767536, gi... - gi\|7379307\|emb\|CAB83862.1\| hypothetical protein NMA0571 [Neisseria meningitidis Z2491], gi\|218767536... gi\|11279817 - pir\|\|H81975 hypothetical protein NMA0571 [imported] - Neisseria meningitidis (strain Z2491 serogroup...	114.0	[0..1]	[166..9]

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Predicted Domain #1

Region A:
Residues: [1-167]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHALHFSASD KAALYREVLP QIESVVADEA DWVANLANTA AVLKEAFGWF WVGFYLVDTR  60
   61 SDELVLAPFQ GPLACTRIPF GRGVCGQAWA KGETVVVKDV NAHPDHIACS SLSRSEIVVP 120
  121 LFSDGRCIGV LDADSEHLAQ FDETDALYLG ELAKILEKRF EASRQAV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	1vhmA
Description:	Crystal structure of an hypothetical protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.10915247373974	bayes_pls_golite062009
transcription regulator activity	1.5060301152751	bayes_pls_golite062009
nucleic acid binding	1.32736924614801	bayes_pls_golite062009
DNA binding	1.31562572870243	bayes_pls_golite062009
transcription factor activity	1.09596276636897	bayes_pls_golite062009
protein binding	0.0688725708976988	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: