YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42573479, gi\|...
Organism:	Arabidopsis thaliana
Length:	422 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42573479, gi|....

Description	E-value	Query Range	Subject Range
gi\|42563535, gi\|... - gi\|6671963\|gb\|AAF23222.1\|AC013454_9 unknown protein [Arabidopsis thaliana], gi\|62320520\|dbj\|BAD95090...	479.0	[0..1]	[420..1]
gi\|87240996 - gi\|87240996\|gb\|ABD32854.1\| Protein of unknown function [Medicago truncatula]	457.0	[0..1]	[422..1]
gi\|119189969, gi... - gi\|90304377\|gb\|EAS34008.1\| hypothetical protein CIMG_05032 [Coccidioides immitis RS], gi\|119189969\|r...	442.0	[0..2]	[405..14]
gi\|46136121, gi\|... - gi\|46136121\|ref\|XP_389752.1\| hypothetical protein FG09576.1 [Gibberella zeae PH-1], gi\|42554290\|gb\|E...	435.0	[0..5]	[413..17]
gi\|169605715, gi... - gi\|169605715\|ref\|XP_001796278.1\| hypothetical protein SNOG_05882 [Phaeosphaeria nodorum SN15], gi\|11...	432.0	[0..7]	[418..25]
gi\|71020313, gi\|... - gi\|71020313\|ref\|XP_760387.1\| hypothetical protein UM04240.1 [Ustilago maydis 521], ref\|XP_401855.1\| ...	416.0	[0..2]	[414..169]
gi\|114196382, gi... - gi\|115384286\|ref\|XP_001208690.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	410.0	[0..5]	[405..16]
gi\|73958206 - gi\|73958206\|ref\|XP_547015.2\| PREDICTED: similar to Putative MAP kinase-activating protein C22orf5 [C...	406.0	[0..4]	[332..237]

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Predicted Domain #1

Region A:
Residues: [1-76]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLIPFYLN IVAFLCTVGA IALAIFHIYR HLLNYTEPTY QRYIVRIIFM VPVYAFMSFL  60
   61 SLVLPKSSIY FDSIRE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [77-269]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VYEAWVIYNF LSLCLAWVGG PGSVVLSLSG RSLKPSWSLM TCCFPPLTLD GRFIRRCKQG  60
   61 CLQFVILKPI LVAVTLVLYA KGKYKDGNFN PDQAYLYLTI IYTISYTVAL YALVLFYMAC 120
  121 RDLLQPFNPV PKFVIIKSVV FLTYWQGVLV FLAAKSGFIK SAEAAAHFQN FIICVEMLIA 180
  181 AACHFYAFPY KEY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [270-338]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGANVGGSGS FSGSLSHAVK LNDFYHDTVH QFAPTYHDYV LYNHQDGGDE GTKKYRSRTF  60
   61 VPTGQEMDA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [339-422]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKNKPVYAN KIDGVSVSSS LSSEASSPKS SSVTSDPARS DAVKSSLLVD ASDSLETMYD  60
   61 MSLIDIDLSS FPSNVPSASE SGPR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits