YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUA5_BOVIN
Organism:	Bos taurus
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUA5_BOVIN.

Description	E-value	Query Range	Subject Range
gi\|91090254 - gi\|91090254\|ref\|XP_970002.1\| PREDICTED: similar to CG9007-PA [Tribolium castaneum]	199.0	[0..1]	[115..1]
gi\|57095956 - gi\|57095956\|ref\|XP_532446.1\| PREDICTED: similar to NADH-ubiquinone oxidoreductase 13 kDa-B subunit (...	197.0	[0..1]	[116..1]
NDUA5_MACFA - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Macaca fascicularis GN=NDUFA5 PE=3 S...	195.0	[0..1]	[116..1]
gi\|113931626, gi... - gi\|89272445\|emb\|CAJ83085.1\| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 [Xenopus tropicali...	193.0	[0..1]	[116..1]
gi\|148224812, gi... - gi\|50728132\|ref\|XP_415997.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 alpha subcomple...	192.0	[0..1]	[116..1]
gi\|61371475, gi\|... - gi\|61371475\|gb\|AAX43674.1\| NADH dehydrogenase 1 alpha subcomplex 5 [synthetic construct], gi\|3058488...	191.0	[0..1]	[116..1]
NDUFA5 - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5, 13kDa NDUA5_GORGO - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Gorilla gorilla gorilla GN=NDUFA5 PE... NDUA5_PANTR - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Pan troglodytes GN=NDUFA5 PE=3 SV=3 gi\|111662352 - gi\|111662352\|gb\|ABH12242.1\| mitochondrial complex I subunit NDUFA5 [Gorilla gorilla] gi\|60654927, gi\|... - gi\|60820768\|gb\|AAX36548.1\| NADH dehydrogenase 1 alpha subcomplex 5 [synthetic construct], gi\|6065492...	191.0	[0..1]	[116..1]
NDUA5_PONAB - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Pongo abelii GN=NDUFA5 PE=3 SV=3 NDUA5_PONPY - NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 OS=Pongo pygmaeus GN=NDUFA5 PE=3 SV=1	191.0	[0..1]	[116..1]
gi\|157107697, gi... - gi\|157107697\|ref\|XP_001649896.1\| NADH dehydrogenase, putative [Aedes aegypti], gi\|108879508\|gb\|EAT43...	190.0	[0..1]	[115..35]

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Predicted Domain #1

Region A:
Residues: [1-38]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLLKKTTG LVGLAVCETP HERLKILYTK ILDVLGHI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [39-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PKNAAYRKYT EQITNEKLSM VKAEPDVKKL EERLQGGQIE EVILQAENEL SLARKMIQWK  60
   61 PWEPLVEEPP ASQWKWPI

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.956
Match:	1bv4A
Description:	Mannose-binding protein A, lectin domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity	3.75809169694613	bayes_pls_golite062009
substrate-specific transporter activity	2.16986363706599	bayes_pls_golite062009
binding	2.0084788620588	bayes_pls_golite062009
receptor activity	1.45541714002846	bayes_pls_golite062009
transmembrane receptor activity	1.43788844705093	bayes_pls_golite062009
signal transducer activity	0.914967133114774	bayes_pls_golite062009
molecular transducer activity	0.914967133114774	bayes_pls_golite062009
protein binding	0.900067207195253	bayes_pls_golite062009
catalytic activity	0.133148263088045	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: