YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PLDG2_ARATH
Organism: Arabidopsis thaliana
Length: 856 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for PLDG2_ARATH.

Predicted Domain #1
Region A:
Residues: [1-61]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMGGGSNHE FGQWLDQQLV PLATSSGSLM VELLHGNLDI WVKEAKHLPN MICYRNKLVG  60
   61 G

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.69897
Match: 2eliA
Description: No description for 2eliA was found.

Predicted Domain #2
Region A:
Residues: [62-322]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ISFSELGRRI RKVDGEKSSK FTSDPYVTVS ISGAVIGRTF VISNSENPVW MQHFDVPVAH  60
   61 SAAEVHFVVK DNDPIGSKII GVVGIPTKQL CSGNRIEGLF PILNSSGKPC RKGAMLSLSI 120
  121 QYTPMERMRL YQKGVGSGVE CVGVPGTYFP LRKGGRVTLY QDAHVDDGTL PSVHLDGGIQ 180
  181 YRHGKCWEDM ADAIRRARRL IYITGWSVFH PVRLVRRNND PTEGTLGELL KVKSQEGVRV 240
  241 LVLVWDDPTS MSFPGFSTKG L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.522879
Match: 1dqvA
Description: Synaptogamin I
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [323-779]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTSDEETRR FFKHSSVQVL LCPRYGGKGH SFIKKSEVET IYTHHQKTMI VDAEAAQNRR  60
   61 KIVAFVGGLD LCNGRFDTPK HSLFGTLKTL HKDDFHNPNF VTTEDVGPRE PWHDLHSKID 120
  121 GPAAYDVLAN FEERWMASKP RGIGKGRTSF DDSLLRINRI PDIMGLSEAS SANDNDPESW 180
  181 HVQVFRSIDS TSVKGFPKDP EEATGRNLLC GKNILIDMSI HAAYVKAIRS AQHFIYIENQ 240
  241 YFLGSSFNWD SNKDLGANNL IPMEIALKIA NKIRARENFA AYIVIPMWPE GAPTSKPIQR 300
  301 ILYWQHKTMQ MMYQTIYKAL LEVGLDGQLE PQDFLNFFCL GNREVGTREV PDGTVNVYNC 360
  361 PRKPPQPNAA QVQALKSRRF MIYVHSKGMV VDDEFVLIGS ANINQRSLEG TRDTEIAMGG 420
  421 YQPHHSWAKK GSRPRGQIFG YRMSLWAEHL GFLEQEF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.154902
Match: 1f0iA
Description: Phospholipase D
Matching Structure (courtesy of the PDB):

Predicted Domain #4
Region A:
Residues: [780-856]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EEPENMECVR RVRQLSELNW GQYAAEEVTE MSGHLLKYPV QVDKTGKVSS LPGCETFPDL  60
   61 GGKIIGSFLT LQENLTI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle