| Protein: | VSR7_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 625 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VSR7_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
473.0 | [0..1] | [625..1] |
|
Region A: Residues: [1-70] |
1 11 21 31 41 51
| | | | | |
1 MGLVNGRASL TFLLAALTII AMVVEARFVV EKESISVLNP EEMRSKHDGS IANFGLPDYG 60
61 GFLIGSVVYP
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [71-187] |
1 11 21 31 41 51
| | | | | |
1 DSKTDGCSAF GKTFKPKFPR PTILLLDRGG CYFALKAWHA QQAGAAAVLV ADNVDEPLLT 60
61 MDSPEESKDA DGFIEKLTIP SVLIDKSFGD DLRQGFQKGK NIVIKLDWRE SVPHPDK
|
| Detection Method: | |
| Confidence: | 8.154902 |
| Match: | 1xf1A |
| Description: | Structure of C5a peptidase- a key virulence factor from Streptococcus |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [188-558] |
1 11 21 31 41 51
| | | | | |
1 RVEYELWTNS NDECGARCDE QMDFVKNFKG HAQILEKGGY TAFTPHYITW FCPFQFINSP 60
61 HCKSQCINHG RYCAPDPEDN FREGYEGKDV VLENLRQLCV HRVANESSRP WVWWDYVTDF 120
121 HSRCSMKEKK YSIDCAESVI KSLNLPIEKI KKCIGDPEAD TENQVLRTEQ VSQIGRGNRG 180
181 DVTILPTLVI NNAQYRGRLE RTAVLKAICA GFNETSEPAI CLNTGLETNE CLENNGGCWQ 240
241 DTKANITACQ DTFRGRLCEC PVVKGVQYKG DGYTSCTPYG PARCTMNNGG CWSDTRNGLT 300
301 FSACSDSVST GCKCPEGFQG DGLTCEDINE CKERSVCQCS GCRCKNSWGG YKCSCSGDRL 360
361 YINDQDTCIE R
|
| Detection Method: | |
| Confidence: | 21.0 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.286076792172079 | bayes_pls_golite062009 |
| protein binding | 0.14494900666454 | bayes_pls_golite062009 |
|
Region A: Residues: [559-625] |
1 11 21 31 41 51
| | | | | |
1 YGSKTAWWLT FLILAIVAVA GLAGYIFYKY RFRSYMDSEI MTIMSQYMPL ESQRAREVPS 60
61 EAEPFTL
|
| Detection Method: | |
| Confidence: | 11.0 |
| Match: | 1tozA |
| Description: | NMR structure of the human NOTCH-1 ligand binding region |
Matching Structure (courtesy of the PDB): |
|
