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View Structure Prediction Details

Protein: IQD14_ARATH
Organism: Arabidopsis thaliana
Length: 668 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IQD14_ARATH.

Description E-value Query
Range
Subject
Range
gi|70878103 - gi|70878103|gb|EAN91386.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71648919 - gi|71648919|ref|XP_813237.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
295.0 [0..2] [663..730]

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Predicted Domain #1
Region A:
Residues: [1-255]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKKGSWFSA IKRVFTPHSK EKLANEPERK SGKEKKKKGF GKLRHGETNS FLPIFREPSS  60
   61 IEKILGEAER DHNLVFRPPT PDRPNPYSAS PPPRPASPRV ASPRPTSPRV ASPRVPSPRA 120
  121 EVPRTLSPKP PSPRAEVPRS LSPKPPSPRA DLPRSLSPKP FDRSKPSSAS ANAPPTLRPA 180
  181 STRVPSQRIT PHSVPSPRPS SPRGASPQAI SSKPPSPRAE PPTLDTPRPP SPRAASLRAD 240
  241 PPRLDAARPT TPRPP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [256-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPLADAPRLD APRPTTPKPP SPRSDPPRLD APRPTTPKPP SPRSVSPRAV QRREIVYRPE  60
   61 PTLPVQHASA TKI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [329-367]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGAFRGYMAR KSFRALKGLV RLQGVVRGYS VKRQTINAM

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.13
Match: 2ix7C
Description: No description for 2ix7C was found.

Predicted Domain #4
Region A:
Residues: [368-469]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYMQQVVRVQ SQIQSRRIKM LENQAQVEKD EAKWAASEAG NDNWDDSVLT KEERDSRSQR  60
   61 KTDAIIKRER SMAYAYSRKL WKNSPKSTQD NRSFPQWWNW VD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [470-668]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQNPLASPAP SYSQPQRDFR LTPSRLCPSP LSQSSKQHHI RLDNHFDTST PRSSRSTFHT  60
   61 PSRPIHTGTS RYSRGRLRGQ DSPFKDDDSL TSCPPFPSYM APTVSAKAKV RPNSNPKERV 120
  121 MGTPVSEKRR MSYPPTQDTF RWNKGSLVMS NSSSHRGPGS PGGVVLEKHK TLKSVGNLSI 180
  181 GSTASMATTV GRKEFNRFV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle