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View Structure Prediction Details

Protein: ATB22_ARATH
Organism: Arabidopsis thaliana
Length: 185 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATB22_ARATH.

Description E-value Query
Range
Subject
Range
gi|162463494, gi... - gi|5531484|emb|CAB51059.1| OCL1 homeobox protein [Zea mays], gi|162463494|ref|NP_001105493.1| outer ...
122.0 [0..23] [183..34]

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Predicted Domain #1
Region A:
Residues: [1-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYWSSSFID GASSSSFISP FYNFDHFSGN QDNRCLGTMM GAQQDILHVP LAMVESGYGE  60
   61 ESNSFNGQEK KKKKMTSEQL KFLERSFQEE IKLNPDRKMK LNPDRKMKLS KELGLQPRQI 120
  121 AVWFQNRKAR WKNKQLEHLY ESLRQEFDIV SREKELLQEE LIQLKSMIRE DSSCKKKQTW 180
  181 EKACS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.69897
Match: 1b72A
Description: Homeobox protein hox-b1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.334577365229545 bayes_pls_golite062009
transcription regulator activity 0.0696342306231097 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle