YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30686199, gi\|...
Organism:	Arabidopsis thaliana
Length:	613 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30686199, gi|....

Description	E-value	Query Range	Subject Range
gi\|109127665 - gi\|109127665\|ref\|XP_001108222.1\| PREDICTED: similar to Tif-IA CG3278-PA isoform 2 [Macaca mulatta]	725.0	[0..1]	[599..24]
RRN3 - RRN3 RNA polymerase I transcription factor homolog (S. cerevisiae)	715.0	[0..1]	[599..24]
gi\|73959061 - gi\|73959061\|ref\|XP_536965.2\| PREDICTED: similar to RRN3 RNA polymerase I transcription factor homolo...	713.0	[0..10]	[613..32]
RRN3_PONAB - RNA polymerase I-specific transcription initiation factor RRN3 OS=Pongo abelii GN=RRN3 PE=2 SV=1 RRN3_PONPY - RNA polymerase I-specific transcription initiation factor RRN3 - Pongo pygmaeus (Orangutan)	698.0	[0..1]	[599..24]
RRN3_MOUSE - RNA polymerase I-specific transcription initiation factor RRN3 OS=Mus musculus GN=Rrn3 PE=1 SV=1	696.0	[0..10]	[599..30]
gi\|167555129, gi... - gi\|84105561\|gb\|AAI11507.1\| LOC443681 protein [Xenopus laevis], gi\|167555129\|ref\|NP_001107876.1\| hypo...	694.0	[0..12]	[612..1]
gi\|109489580, gi... - gi\|109489580\|ref\|XP_001075816.1\| PREDICTED: similar to RRN3 RNA polymerase I transcription factor ho...	688.0	[0..10]	[599..30]
gi\|68444045 - gi\|68444045\|ref\|XP_683274.1\| PREDICTED: similar to RRN3 RNA polymerase I transcription factor homolo...	683.0	[0..12]	[611..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAVELMSDP SSLCTVENYV DNVDLSDTQL VQTVRKALTS VKTGDSDLYS EMVGVMARDI  60
   61 KEFKDPDVVA QLETVLKALS GAVACIDVLH HQKLLSALFR MKLWDHRPDV MDALVNLVIS 120
  121 L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.883	N/A	N/A	a.118.19	Description not found.

Predicted Domain #2

Region A:
Residues: [122-244]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVTSGKYLDS CLNMLVSNFV PPPWVVNNLS HSRILNKKID VLSRVHAALL KISILVPLTP  60
   61 SRLVPMLFQQ MPKMHKKDHS IVIYVESLLK LENSSIGQVG GSMILGMVME RLRDLDLEIE 120
  121 WDD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [245-445]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPQDDSSRGM FDMELEDAAE GTMNDGDELP VGPLKQDTSD GSIVSKLLDK LMVVAFEHLE  60
   61 SCQNDGRLDQ VFESLFKSFE NFILNTYKSK FTQFLIFYAC SLDPENCGVK FASKLVEIFL 120
  121 SSNKHVATRM SAVAYLASFL ARGKFLPVSF VASMLKRLID ECVGYCRTCN DDTRPEAHQI 180
  181 FFSGCQAIMY VLCFRMRSIL D

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [446-613]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPRFRSQLTP LESILMHKLN PLMVCLPSVV AEFLRQAKEG GLFIVSDSFI FDDLLESELS  60
   61 RAFGGFERLD TFFPFDPCLL KSSNSFISPN FIYWSMVKAT YDEDDDDNDA EVIVNGDEDS 120
  121 DEDDEADLDY ALNKMSITPK HSFKNKMERD RLLRMPSRIR PSTSPESL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits