| Protein: | ATX1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 1062 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATX1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
424.0 | [0..1] | [1062..1] |
|
|
322.0 | [0..72] | [1056..30] |
|
|
223.0 | [0..6] | [1050..766] |
|
|
218.0 | [0..10] | [1050..683] |
|
|
218.0 | [0..6] | [1050..766] |
|
Region A: Residues: [1-241] |
1 11 21 31 41 51
| | | | | |
1 MACFSNETQI EIDVHDLVEA PIRYDSIESI YSIPSSALCC VNAVGSHSLM SKKVKAQKLP 60
61 MIEQFEIEGS GVSASDDCCR SDDYKLRIQR PEIVRVYYRR RKRPLRECLL DQAVAVKTES 120
121 VELDEIDCFE EKKRRKIGNC ELVKSGMESI GLRRCKENNA FSGNKQNGSS RRKGSSSKNQ 180
181 DKATLASRSA KKWVRLSYDG VDPTSFIGLQ CKVFWPLDAL WYEGSIVGYS AERKRYTVKY 240
241 R
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [242-375] |
1 11 21 31 41 51
| | | | | |
1 DGCDEDIVFD REMIKFLVSR EEMELLHLKF CTSNVTVDGR DYDEMVVLAA TLDECQDFEP 60
61 GDIVWAKLAG HAMWPAVIVD ESIIGERKGL NNKVSGGGSL LVQFFGTHDF ARIKVKQAIS 120
121 FIKGLLSPSH LKCK
|
| Detection Method: | |
| Confidence: | 8.69897 |
| Match: | 1khcA |
| Description: | DNA methyltransferase DNMT3B |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [376-813] |
1 11 21 31 41 51
| | | | | |
1 QPRFEEGMQE AKMYLKAHRL PERMSQLQKG ADSVDSDMAN STEEGNSGGD LLNDGEVWLR 60
61 PTEHVDFRHI IGDLLIINLG KVVTDSQFFK DENHIWPEGY TAMRKFTSLT DHSASALYKM 120
121 EVLRDAETKT HPLFIVTADS GEQFKGPTPS ACWNKIYNRI KKVQNSDSPN ILGEELNGSG 180
181 TDMFGLSNPE VIKLVQDLSK SRPSSHVSMC KNSLGRHQNQ PTGYRPVRVD WKDLDKCNVC 240
241 HMDEEYENNL FLQCDKCRMM VHAKCYGELE PCDGALWLCN LCRPGAPDMP PRCCLCPVVG 300
301 GAMKPTTDGR WAHLACAIWI PETCLSDVKK MEPIDGVNKV SKDRWKLMCT ICGVSYGACI 360
361 QCSNNSCRVA YHPLCARAAG LCVELENDMS VEGEEADQCI RMLSFCKRHR QTSTACLGSE 420
421 DRIKSATHKT SEYLPPPN
|
| Detection Method: | |
| Confidence: | 4.30103 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [814-1062] |
1 11 21 31 41 51
| | | | | |
1 PSGCARTEPY NCFGRRGRKE PEALAAASSK RLFVENQPYV IGGYSRLEFS TYKSIHGSKV 60
61 SQMNTPSNIL SMAEKYRYMR ETYRKRLAFG KSGIHGFGIF AKLPHRAGDM MIEYTGELVR 120
121 PSIADKREQL IYNSMVGAGT YMFRIDDERV IDATRTGSIA HLINHSCVPN CYSRVITVNG 180
181 DEHIIIFAKR HIPKWEELTY DYRFFSIGER LSCSCGFPGC RGVVNDTEAE EQHAKICVPR 240
241 CDLIDWTAE
|
| Detection Method: | |
| Confidence: | 18.30103 |
| Match: | 2r3aA |
| Description: | No description for 2r3aA was found. |
