YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|346457
Organism:	Sus scrofa domesticus
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|346457.

Description	E-value	Query Range	Subject Range
gi\|28894125 - gi\|28894125\|gb\|AAO52735.1\| monocyte chemoattractant protein-3 [Macaca nemestrina]	109.0	[0..10]	[116..4]
gi\|164665382, gi... - gi\|57527998\|ref\|NP_001009579.1\| chemokine (C-C motif) ligand 3-like 1 [Sus scrofa], gi\|49354682\|gb\|A...	98.0	[0..17]	[109..1]
SZ05_MOUSE, CXCL... - (P50228) Small inducible cytokine B5 precursor (CXCL5) (Cytokine LIX) [Contains: GCP-2(1-78); GCP-2(...	98.0	[0..1]	[117..1]
CCL4_MACMU - C-C motif chemokine 4 OS=Macaca mulatta GN=CCL4 PE=2 SV=1	95.0	[0..17]	[109..1]
CCL3_RAT - C-C motif chemokine 3 OS=Rattus norvegicus GN=Ccl3 PE=1 SV=1	95.0	[0..17]	[109..1]
gi\|4115613 - gi\|4115613\|dbj\|BAA36456.1\| Monocyte Chemoattractant Protein-3 (MCP-3) [Cavia porcellus]	95.0	[0..17]	[116..1]
CCL4_CHICK - C-C motif chemokine 4 homolog OS=Gallus gallus GN=CCL4 PE=3 SV=4	94.0	[0..17]	[109..1]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLLTSRATR VPSPSGLLCA VLAMLLLTPS GPLASASPIE AAEAAVVREL RCMCLTTTPG  60
   61 IHPKMISDLQ VIPAGPQCSK AEVIATLKNG KEVCLDPKAP LIKKIVQKML DSGKKKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	1f9pA
Description:	CRYSTAL STRUCTURE OF CONNECTIVE TISSUE ACTIVATING PEPTIDE-III(CTAP-III) COMPLEXED WITH POLYVINYLSULFONIC ACID
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits